| Calling Sequence
| AltGenCode(transl_table,codon)
|
| Parameters
| | Name | Type | Description |
|
| transl_table
| integer | alternative translation table |
| codon
| string | 3 DNA bases |
|
| Return Type
| list |
| Globals
| AltGenCode_array, |
| Synopsis
| AltGenCode takes a 3 letter codon as an input and returns
a list of the amino acid(s) for which the triplet codes. A codon has
more than one translation when, in addition to its normal translation,
it is used as an alternative start codon (M). Absent codons are not
designated as such. They will return the translation of the standard
genetic code. The translation tables are the same as those of the reference
website. Additional initiation codons may be possible. See the website for
more information and a list of the organisms that use each code. |
| |
|
| | table number | description |
|
| 1 | The Standard Code |
| 2 | The Vertebrate Mitochondrial Code |
| 3 | The Yeast Mitochondrial Code |
| 4 | The Mold, Protozoan, and Coelenterate Mitochondrial |
| | Code and the Mycoplasma/Spiroplasma Code |
| 5 | The Invertebrate Mitochondrial Code |
| 6 | The Ciliate, Dasycladacean and Hexamita Nuclear Code |
| 7 | deleted |
| 8 | deleted |
| 9 | The Echinoderm Mitochondrial Code |
| 10 | The Euplotid Nuclear Code |
| 11 | The Bacterial and Plant Plastid Code |
| 12 | The Alternative Yeast Nuclear Code |
| 13 | The Ascidian Mitochondrial Code |
| 14 | The Flatworm Mitochondrial Code |
| 15 | Blepharisma Nuclear Code |
| 16 | Chlorophycean Mitochondrial Code |
| 17 | not available |
| 18 | not available |
| 19 | not available |
| 20 | not available |
| 21 | Trematode Mitochondrial Code |
| 22 | Scenedesmus obliquus mitochondrial Code |
| 23 | Thraustochytrium Mitochondrial Code |
|
| |
|
| References
| www.ncbi.nlm.nih.gov/htbin-post/Taxonomy/wprintgc?mode=c#SG4 |
| Examples
| > AltGenCode(11,TTG);
[L, M]
> AltGenCode(11,TTT);
[F]
> AltGenCode(12,CTG);
[S, M]
|
| See also
| AminoToInt, antiparallel, AToCInt, AToCodon, BaseToInt, BBBToInt, BToInt, CIntToA, CIntToAAA, CIntToAmino, CIntToCodon, CIntToInt, CodonToA, CodonToCInt, CodonToInt, Complement, GeneticCode, IntToB, IntToBase, IntToBBB, IntToCInt, IntToCodon, Reverse |