| Calling Sequence
| CalculateScore(seq1,seq2,DM)
|
| Parameters
| | Name | Type | Description |
|
| seq1
| string | first sequence |
| seq2
| string | second sequence |
| DM
| DayMatrix | Dahyhoff matrix to score the sequences |
|
| Return Type
| numeric |
| Synopsis
| Calculate the score between two sequences, as is,
no alignment done. Sequences may contain '_' indicating an indel.
An '_' matched against another '_' will not be scored any value,
like what happens as a result of a multiple alignment. |
| Examples
| > CalculateScore(CITKLWDGDQVLY,CLTKIFDGDQVIV,DM);
50.2066
|
| See also
| Align, EstimatePam |