| Calling Sequence
| CodonDynProgStrings(al)
|
| Parameters
| | Name | Type | Description |
|
| al
| Alignment | Codon alignment |
|
| Return Type
| [numeric, string, string] ([score,seq1,seq2]) |
| Synopsis
| Returns a list with the similarity score, first sequence and
second sequence suitable for printing the aligned DNA sequences (with '___'
inserted at gap positions). |
| Examples
| > al := CodonAlign(AAACCCGGGTTT,AAACCTTTT,CMS,Global);
al := Alignment('AVq#','AX#',10.7382,DMS[368],102,47328.8945,{Global})
> CodonDynProgStrings(al);
[10.7382, AAACCCGGGTTT, AAACCT___TTT]
|
| See also
| CodonAlign, CreateCodonMatrices, EstimateCodonPAM |