| Calling Sequence
| CreateDayMatrix(LogMutMatrix,PamNumber)
|
| Parameters
| | Name | Type | Description |
|
| LogMutMatrix
| array(array(numeric)) | logarithm of a 1-PAM mutation matrix |
| PamNumber
| numeric | desired PAM distance of the result |
| posint..posint | range of integer PAM distances |
|
| Return Type
| {DayMatrix,list(DayMatrix)} |
| Synopsis
| Computes a similarity scoring matrix
(usually called Dayhoff matrix) from a the logarithm of a
1-PAM mutation matrix (LogMutMatrix) and a PAM distance PamNumber.
CreateDayMatrices() assigns the global variable logPAM1 a logarithm
of a 1-PAM mutation matrix.
If the second argument is an integer range, a list of PAM matrices
with all the PAM values in the range will be computed. |
| Examples
| > CreateDayMatrix( NewLogPAM1 , 250);
DayMatrix(Peptide, pam=250, Sim: max=14.152, min=-5.161, del=-19.814-1.396*(k-1))
|
| See also
| CreateDayMatrices, CreateOrigDayMatrix, DayMatrix, SearchDayMatrix |