| Calling Sequence
| CreateSynMatrices()
CreateSynMatrices(setname)
|
| Parameters
| | Name | Type | Description |
|
| setname
| string | name of predefined set. |
|
| Return Type
| NULL |
| Globals
| SynMS, |
| Synopsis
| When called with a set name, the precomputed count
matrices are loaded and used to create the global scoring matrices.
As default, the count matrix form the OMA project is used.
The function then sets all non-synonymous mutation counts to zero
and uses this matrix to create the global list SynMS with 1000
scoring matrices of various SynPAM distances. |
| Examples
| > CreateSynMatrices();
> CreateSynMatrices(mus);
|
| See also
| CodonDynProgStrings, CodonMatrix, CreateCodonMatrices, CreateDayMatrices, EstimateSynPAM |