| Calling Sequence
| EstimateSynPAM(dps1,dps2)
|
| Parameters
| | Name | Type | Description |
|
| dps1
| string | First of the aligned sequences. |
| dps2
| string | Second of the aligned sequences. |
|
| Return Type
| [Score, SynPAM, SynPAMVariance] |
| Synopsis
| Given two codon-wise aligned DNA sequences, this functions finds the
best-scoring SynPAM matrix. Anaologous to EstimatePam, it returns a list
containing the score, the SynPAM estimate and the SynPAM variance. |
| Examples
| > EstimateSynPAM(AAACCCGGGTTT,AAACCG___TTT);
[2.3328, 51.9870, 942.8518]
|
| See also
| CodonAlign, CodonDynProgStrings, CodonMatrix, CreateSynMatrices, EstimateCodonPAM, EstimateNG86, EstimatePam, EstimatePB93 |