| Calling Sequence
| NucPepBackDynProg(nuc,pep,DM,len1,len2,IntronScoring)
|
| Parameters
| | Name | Type | Description |
|
| nuc
| string | a nucleotide sequence |
| pep
| string | a peptide sequence |
| DM
| DayMatrix | Dayhoff Matrix |
| len1
| integer | optional length of the 1st sequence |
| len2
| integer | optional length of the 2nd sequence |
| IntronScoring
| list | optional Intron Scoring list |
|
| Return Type
| NULL |
| Synopsis
| Compute the similarity and lengths of the best alignment between nuc and
pep using the Dayhoff matrix DM, the optional lengths len1 and len2 and
the optional IntronScoring doing backwards dynamic programming. If the
lengths are not given or -1, return the maximum similarity. |
| Examples
| |
| See also
| AlignNucPepAll, AlignNucPepMatch, DynProgNucPepString, FindNucPepPam, GlobalNucPepAlign, LocalNucPepAlign, LocalNucPepAlignBestPam, NucPepDynProg, NucPepMatch |