| Calling Sequence
| NucPepDynProg(nuc,pep,DM,len1,len2,IntronScoring)
|
| Parameters
| | Name | Type | Description |
|
| nuc
| string | Nucleotide Sequence |
| pep
| string | Peptide Sequence |
| DM
| DayMatrix | Dayhoff Matrix |
| len1
| integer | optional length of 1st sequence |
| len2
| integer | optional length of 2st sequence |
| IntronScoring
| list | Intron scoring |
|
| Return Type
| NULL |
| Synopsis
| Compute the similarity and lengths of the best alignment between nuc and
pep using the Dayhoff matrix DM, the optional lengths len1 and len2 and
the optional IntronScoring. If the lengths are not given or -1, return
the maximum similarity. |
| Examples
| |
| See also
| AlignNucPepAll, AlignNucPepMatch, DynProgNucPepString, FindNucPepPam, GlobalNucPepAlign, LocalNucPepAlign, LocalNucPepAlignBestPam, NucPepBackDynProg, NucPepMatch |