| Calling Sequence
| PamToCodonPam(lnM1,CF,Pam)
|
| Parameters
| | Name | Type | Description |
|
| lnM1
| matrix(numeric,64) | Logarithm of a 1-PAM codon mutation matrix. |
| CF
| array(numeric,64) | Codon frequencies |
| Pam
| numeric | PAM distance to be converted |
|
| Return Type
| numeric |
| Synopsis
| Converts PAM to CodonPAM.
This conversion depends on the amount of synonymous mutations for a
species or set of species, so the logarithm of the 1-CodonPAM matrix
and the codon frequencies are required as arguments.
The conversion is done by inverting the CodonPamtoPam function
using a Brent's search. |
| Examples
| > PamToCodonPam(CodonLogPAM1,CF,50);
109.2499
|
| See also
| CodonPamToPam, CreateCodonMatrices |