| Calling Sequence
| SearchFrag(seq)
|
| Parameters
| | Name | Type | Description |
|
| seq
| string | |
|
| Return Type
| list(Match) |
| Synopsis
| Return all matches of seq against the peptide database
located in the system variable DB. |
| Examples
| > DB := ReadDb('/home/darwin/DB/SwissProt.Z'):;
Peptide file(/home/darwin/DB/SP45.0/SwissProt45.0(169638448), 163235
entries, 59631787 aminoacids)
> SearchFrag('SGPPRIP');
Searching the fragment SGPPRIP in /home/darwin/DB/SwissProt.Z, Fri Jun 18 17:10:
13 2010
With goal 31.8 and PAM 250, 185 matches were found
After refining with Align/DMS, 4 matches were selected
with similarity not less than 70
|
| See also
| AlignOneAll, PatEntry, SearchAC, SearchDb, SearchID, SearchSeqDb, Species_Entry |