Actinobacteria All Actinobacteria (max Length) (only 1 isoform used) , Thu Dec 16 03:44:52 2010, 85 species, 42935 orthologs, 20 top groups, 214 used here, Weighted, BestSubset, DimlessQual: best: 0.66372, ave: 0.7152 +- 0.0021, var: 0.001103, Z=-1.549 2010-12-22T16:30:20+01:00 100.000000 92.000000 BRAFD 446465 BRAFD Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) 88.000000 100.000000 100.000000 100.000000 TROW8 218496 TROW8 Tropheryma whipplei (strain TW08/27) Whipple's bacillus TROWT 203267 TROWT Tropheryma whipplei (strain Twist) 100.000000 100.000000 CLAMS 31964 CLAMS Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) CLAM3 443906 CLAM3 Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) LEIXX 281090 LEIXX Leifsonia xyli subsp. xyli 100.000000 100.000000 RENSM 288705 RENSM Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) 100.000000 ARTAT 290340 ARTAT Arthrobacter aurescens (strain TC1) 98.000000 ARTCA 452863 ARTCA Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) ARTS2 290399 ARTS2 Arthrobacter sp. (strain FB24) 100.000000 ROTMD 680646 ROTMD Rothia mucilaginosa (strain DY-18) KOCRD 378753 KOCRD Kocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201) 92.000000 KINRD 266940 KINRD Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) 100.000000 100.000000 98.000000 100.000000 99.000000 100.000000 SLAHD 471855 SLAHD Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) CRYCD 469378 CRYCD Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) RUBXD 266117 RUBXD Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) ACIFD 525909 ACIFD Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) 76.000000 71.000000 94.000000 100.000000 100.000000 SALTO 369723 SALTO Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) SALAI 391037 SALAI Salinispora arenicola (strain CNS-205) STANL 446470 STANL Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) 100.000000 100.000000 100.000000 100.000000 100.000000 92.000000 100.000000 CORU7 504474 CORU7 Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) CORJK 306537 CORJK Corynebacterium jeikeium (strain K411) CORK4 645127 CORK4 Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) 100.000000 CORA7 548476 CORA7 Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) 100.000000 100.000000 CORPF 765874 CORPF Corynebacterium pseudotuberculosis (strain FRC41) CORDI 257309 CORDI Corynebacterium diphtheriae 100.000000 COREF 152794 COREF Corynebacterium efficiens 100.000000 CORGB 340322 CORGB Corynebacterium glutamicum (strain R) CORGL 196627 CORGL Corynebacterium glutamicum 100.000000 100.000000 100.000000 RHOE4 234621 RHOE4 Rhodococcus erythropolis (strain PR4 / NBRC 100887) 100.000000 RHOOB 632772 RHOOB Rhodococcus opacus (strain B4) RHOSR 101510 RHOSR Rhodococcus sp. (strain RHA1) NOCFA 247156 NOCFA Nocardia farcinica 100.000000 100.000000 100.000000 100.000000 MYCA1 243243 MYCA1 Mycobacterium avium (strain 104) MYCPA 262316 MYCPA Mycobacterium paratuberculosis 71.000000 81.000000 100.000000 MYCMM 216594 MYCMM Mycobacterium marinum (strain ATCC BAA-535 / M) MYCUA 362242 MYCUA Mycobacterium ulcerans (strain Agy99) 100.000000 MYCTF 336982 MYCTF Mycobacterium tuberculosis (strain F11) 82.000000 100.000000 100.000000 MYCBT 561275 MYCBT Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) MYCBP 410289 MYCBP Mycobacterium bovis (strain BCG / Paris 1173P2) MYCBO 1765 MYCBO Mycobacterium bovis 67.000000 MYCTA 419947 MYCTA Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) MYCTU 83332 MYCTU Mycobacterium tuberculosis 100.000000 MYCLB 561304 MYCLB Mycobacterium leprae (strain Br4923) MYCLE 272631 MYCLE Mycobacterium leprae 100.000000 87.000000 100.000000 MYCGI 350054 MYCGI Mycobacterium gilvum (strain PYR-GCK) MYCVP 350058 MYCVP Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) 100.000000 MYCSJ 164757 MYCSJ Mycobacterium sp. (strain JLS) 100.000000 MYCSK 189918 MYCSK Mycobacterium sp. (strain KMS) MYCSS 164756 MYCSS Mycobacterium sp. (strain MCS) MYCS2 246196 MYCS2 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) MYCA9 561007 MYCA9 Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) 100.000000 94.000000 SACVD 471857 SACVD Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) SACEN 405948 SACEN Saccharopolyspora erythraea (strain NRRL 23338) ACTMD 446462 ACTMD Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) NAKMY 479431 NAKMY Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) GEOOG 526225 GEOOG Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) 90.000000 100.000000 FRASN 298653 FRASN Frankia sp. (strain EAN1pec) 100.000000 FRAAA 326424 FRAAA Frankia alni (strain ACN14a) FRASC 106370 FRASC Frankia sp. (strain CcI3) 98.000000 ACIC1 351607 ACIC1 Acidothermus cellulolyticus (strain ATCC 43068 / 11B) 87.000000 100.000000 97.000000 THECD 471852 THECD Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) STRRD 479432 STRRD Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) THEFY 269800 THEFY Thermobifida fusca (strain YX) 100.000000 CATAD 479433 CATAD Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) 100.000000 STRGG 455632 STRGG Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) 100.000000 STRCO 1902 STRCO Streptomyces coelicolor 100.000000 STRSW 680198 STRSW Streptomyces scabies (strain 87.22) STRAW 227882 STRAW Phytoplasma sp. (strain STRAWB1) NOCSJ 196162 NOCSJ Nocardioides sp. (strain BAA-499 / JS614) PROAC 267747 PROAC Propionibacterium acnes KYTSD 478801 KYTSD Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) 100.000000 BEUC1 471853 BEUC1 Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) 100.000000 XYLCX 446471 XYLCX Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) 100.000000 JONDD 471856 JONDD Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) SANKS 446469 SANKS Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) 100.000000 GARV4 553190 GARV4 Gardnerella vaginalis (strain 409-05) 91.000000 100.000000 100.000000 BIFAA 367928 BIFAA Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) BIFDB 401473 BIFDB Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) 100.000000 BIFLD 205913 BIFLD Bifidobacterium longum (strain DJO10A) BIFLO 206672 BIFLO Bifidobacterium longum 100.000000 88.000000 BIFAV 573236 BIFAV Bifidobacterium animalis subsp. lactis (strain V9) 67.000000 BIFA0 442563 BIFA0 Bifidobacterium animalis subsp. lactis (strain AD011) BIFLB 580050 BIFLB Bifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219) BIFAB 552531 BIFAB Bifidobacterium animalis subsp. lactis (strain BB-12)