Archaea All Archaeal genomes, Mon Dec 12 17:36:17 2011, 93 species, 25553 orthologs, 33 top groups, 123 used here, Weighted, BestSubset, DimlessQual: best: 0.8214, ave: 0.9904 +- 0.0051, var: 0.006658, Z=-2.072 2011-12-23T06:00:10+01:00 100.000000 65.000000 NANEQ 228908 NANEQ Nanoarchaeum equitans 100.000000 100.000000 98.000000 100.000000 THEON 523850 THEON Thermococcus onnurineus (strain NA1) 100.000000 THEGJ 593117 THEGJ Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) PYRKO 69014 PYRKO Thermococcus kodakaraensis Pyrococcus kodakaraensis 100.000000 PYRFU 186497 PYRFU Pyrococcus furiosus 100.000000 PYRAB 272844 PYRAB Pyrococcus abyssi PYRHO 70601 PYRHO Pyrococcus horikoshii THESM 604354 THESM Thermococcus sibiricus (strain MM 739 / DSM 12597) 98.000000 97.000000 METKA 190192 METKA Methanopyrus kandleri 86.000000 100.000000 100.000000 96.000000 100.000000 100.000000 METHJ 323259 METHJ Methanospirillum hungatei (strain JF-1 / DSM 864) 74.000000 100.000000 METMJ 368407 METMJ Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) 100.000000 METPE 521011 METPE Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) METB6 456442 METB6 Methanoregula boonei (strain 6A8) METP4 679926 METP4 Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) METLZ 410358 METLZ Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) 100.000000 100.000000 UNCMA 351160 UNCMA Uncultured methanogenic archaeon RC-I METPS 304371 METPS Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) 99.000000 METTP 349307 METTP Methanosaeta thermophila (strain DSM 6194 / PT) 100.000000 91.000000 METEZ 644295 METEZ Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) 100.000000 METBU 259564 METBU Methanococcoides burtonii (strain DSM 6242) METMS 547558 METMS Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) 100.000000 100.000000 METMA 192952 METMA Methanosarcina mazei METAC 188937 METAC Methanosarcina acetivorans METBF 269797 METBF Methanosarcina barkeri (strain Fusaro / DSM 804) 100.000000 100.000000 HALS3 478009 HALS3 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) HALSA 64091 HALSA Halobacterium salinarium Halobacterium halobium 86.000000 96.000000 62.000000 100.000000 NATMM 547559 NATMM Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) HALTV 543526 HALTV Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) HALJB 795797 HALJB Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) 100.000000 NATPD 348780 NATPD Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) 100.000000 100.000000 HALMD 485914 HALMD Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) HALMA 272569 HALMA Haloarcula marismortui HALUD 519442 HALUD Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) 100.000000 99.000000 HALVD 309800 HALVD Haloferax volcanii (strain ATCC 29605 / DSM 3757 / IFO 14742 / NCIMB 2012 / DS2) HALWD 362976 HALWD Haloquadratum walsbyi (strain DSM 16790) HALLT 416348 HALLT Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) 100.000000 94.000000 ARCFU 224325 ARCFU Archaeoglobus fulgidus ARCPA 572546 ARCPA Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) FERPA 589924 FERPA Ferroglobus placidus (strain DSM 10642 / AEDII12DO) 100.000000 100.000000 METST 339860 METST Methanosphaera stadtmanae (strain DSM 3091) 100.000000 100.000000 METTM 79929 METTM Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) METTH 187420 METTH Methanobacterium thermoautotrophicum 100.000000 METRM 634498 METRM Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) METS3 420247 METS3 Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) 100.000000 100.000000 META3 419665 META3 Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) 100.000000 100.000000 METVS 406327 METVS Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) 100.000000 100.000000 METM5 402880 METM5 Methanococcus maripaludis (strain C5 / ATCC BAA-1333) 100.000000 METM6 444158 METM6 Methanococcus maripaludis (strain C6 / ATCC BAA-1332) METM7 426368 METM7 Methanococcus maripaludis (strain C7 / ATCC BAA-1331) 100.000000 METMI 1053692 METMI Methanococcus maripaludis METMP 39152 METMP Methanococcus maripaludis METV3 456320 METV3 Methanococcus voltae (strain ATCC BAA-1334 / A3) 100.000000 METIM 573063 METIM Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) 100.000000 METVM 579137 METVM Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) 100.000000 100.000000 METSF 644281 METSF Methanocaldococcus sp. (strain FS406-22) METJA 243232 METJA Methanocaldococcus jannaschii METFA 573064 METFA Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) 100.000000 ACIB4 439481 ACIB4 Aciduliprofundum boonei (strain DSM 19572 / T469) 100.000000 PICTO 263820 PICTO Picrophilus torridus 100.000000 THEAC 273075 THEAC Thermoplasma acidophilum THEVO 273116 THEVO Thermoplasma volcanium 100.000000 100.000000 100.000000 89.000000 100.000000 METS5 399549 METS5 Metallosphaera sedula (strain ATCC 51363 / DSM 5348) 52.000000 100.000000 SULAC 330779 SULAC Sulfolobus acidocaldarius SULTO 273063 SULTO Sulfolobus tokodaii 100.000000 100.000000 SULS9 555311 SULS9 Sulfolobus solfataricus (strain 98/2) SULSO 273057 SULSO Sulfolobus solfataricus 100.000000 72.000000 SULID 425944 SULID Sulfolobus islandicus (strain L.D.8.5 / Lassen #2) 53.000000 90.000000 SULIN 419942 SULIN Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) SULIY 439386 SULIY Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) 99.000000 99.000000 SULIA 427318 SULIA Sulfolobus islandicus (strain M.16.27) SULIM 427317 SULIM Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) SULIK 426118 SULIK Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) SULIL 429572 SULIL Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) 84.000000 96.000000 100.000000 100.000000 STAHD 591019 STAHD Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) STAMF 399550 STAMF Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) 100.000000 THEAM 633148 THEAM Thermosphaera aggregans (strain DSM 11486 / M11TL) DESK1 490899 DESK1 Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) 89.000000 100.000000 ACIS3 666510 ACIS3 Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15) AERPE 272557 AERPE Aeropyrum pernix HYPBU 415426 HYPBU Hyperthermus butylicus (strain DSM 5456 / JCM 9403) IGNAA 583356 IGNAA Ignisphaera aggregans strain (strain DSM 17230 / JCM 13409 / AQ1.S1) IGNH4 453591 IGNH4 Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) 81.000000 THEPD 368408 THEPD Thermofilum pendens (strain Hrk 5) 100.000000 100.000000 CALMQ 397948 CALMQ Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) VULDI 572478 VULDI Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) 100.000000 100.000000 THENV 444157 THENV Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) PYRIL 384616 PYRIL Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) 70.000000 PYRCJ 410359 PYRCJ Pyrobaculum calidifontis (strain JCM 11548 / VA1) 48.000000 PYRAR 340102 PYRAR Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) PYRAE 178306 PYRAE Pyrobaculum aerophilum KORCO 374847 KORCO Korarchaeum cryptofilum (strain OPF8) 100.000000 NITMS 436308 NITMS Nitrosopumilus maritimus (strain SCM1) CENSY 414004 CENSY Cenarchaeum symbiosum