Firmicutes All Firmicutes (max Length) (only 1 isoform used) , Wed Oct 27 09:21:52 2010, 177 species, 45611 orthologs, 59 top groups, 228 used here, Weighted, BestSubset, DimlessQual: best: 0.26287, ave: 0.3001 +- 0.0010, var: 0.0002853, Z=-2.203 2010-10-29T10:30:14+02:00 100.000000 100.000000 100.000000 100.000000 100.000000 LACLM 416870 LACLM Lactococcus lactis subsp. cremoris (strain MG1363) LACLS 272622 LACLS Lactococcus lactis subsp. cremoris (strain SK11) LACLA 1360 LACLA Lactococcus lactis subsp. lactis 100.000000 100.000000 100.000000 78.000000 STRSY 391295 STRSY Streptococcus suis (strain 05ZYH33) 43.000000 27.000000 STRSE 218494 STRSE Streptococcus suis (strain P1/7) STRS4 568814 STRS4 Streptococcus suis (strain BM407) STRSX 568813 STRSX Streptococcus suis (strain SC84) STRS2 391296 STRS2 Streptococcus suis (strain 98HAH33) 100.000000 100.000000 STRGC 29390 STRGC Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) STRSV 388919 STRSV Streptococcus sanguinis (strain SK36) 100.000000 STRP4 512566 STRP4 Streptococcus pneumoniae serotype 19F (strain G54) 41.000000 STRPI 487214 STRPI Streptococcus pneumoniae (strain Hungary19A-6) 30.000000 26.000000 STRZT 487213 STRZT Streptococcus pneumoniae (strain Taiwan19F-14) 95.000000 44.000000 56.000000 STRPS 516950 STRPS Streptococcus pneumoniae (strain CGSP14) 100.000000 STRZJ 488222 STRZJ Streptococcus pneumoniae (strain JJA) STRPJ 561276 STRPJ Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) 85.000000 100.000000 STRP2 373153 STRP2 Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) STRR6 171101 STRR6 Streptococcus pneumoniae (strain ATCC BAA-255 / R6) STRPN 170187 STRPN Streptococcus pneumoniae STRZP 488223 STRZP Streptococcus pneumoniae (strain P1031) STRP7 488221 STRP7 Streptococcus pneumoniae (strain 70585) 100.000000 66.000000 100.000000 STRTD 322159 STRTD Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) 99.000000 STRT2 264199 STRT2 Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) STRT1 299768 STRT1 Streptococcus thermophilus (strain CNRZ 1066) 100.000000 STRG3 637909 STRG3 Streptococcus gallolyticus (strain UCN34) 100.000000 100.000000 64.000000 STRA3 211110 STRA3 Streptococcus agalactiae serotype III STRA5 216466 STRA5 Streptococcus agalactiae (serotype V) STRA1 355315 STRA1 Streptococcus agalactiae serotype Ia 100.000000 STRU0 218495 STRU0 Streptococcus uberis (strain ATCC BAA-854 / 0140J) 100.000000 100.000000 58.000000 STRE4 553482 STRE4 Streptococcus equi subsp. equi (strain 4047) STREM 552526 STREM Streptococcus equi subsp. zooepidemicus (strain MGCS10565) STRS7 40041 STRS7 Streptococcus equi subsp. zooepidemicus (strain H70) 100.000000 100.000000 58.000000 30.000000 26.000000 39.000000 STRPD 370552 STRPD Streptococcus pyogenes serotype M2 (strain MGAS10270) 67.000000 STRPF 370554 STRPF Streptococcus pyogenes serotype M4 (strain MGAS10750) 100.000000 STRP8 301451 STRP8 Streptococcus pyogenes (serotype M18) 48.000000 STRPG 160491 STRPG Streptococcus pyogenes serotype M5 (strain Manfredo) STRP6 301450 STRP6 Streptococcus pyogenes (serotype M6) 53.000000 STRP1 160490 STRP1 Streptococcus pyogenes serotype M1 STRPZ 471876 STRPZ Streptococcus pyogenes serotype M49 (strain NZ131) STRPM 319700 STRPM Streptococcus pyogenes serotype M28 STRP3 198466 STRP3 Streptococcus pyogenes serotype M3 73.000000 STRPB 370553 STRPB Streptococcus pyogenes serotype M12 (strain MGAS2096) STRPC 370551 STRPC Streptococcus pyogenes serotype M12 (strain MGAS9429) STRDG 486410 STRDG Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) 100.000000 STRMN 511691 STRMN Streptococcus mutans serotype c (strain NN2025) STRMU 210007 STRMU Streptococcus mutans ENTFA 226185 ENTFA Enterococcus faecalis 100.000000 92.000000 100.000000 100.000000 LACDB 321956 LACDB Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) LACDA 390333 LACDA Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) 100.000000 100.000000 LACH4 405566 LACH4 Lactobacillus helveticus (strain DPC 4571) LACAC 1579 LACAC Lactobacillus acidophilus 100.000000 LACGA 324831 LACGA Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) LACJO 257314 LACJO Lactobacillus johnsonii 100.000000 95.000000 LACS1 362948 LACS1 Lactobacillus salivarius subsp. salivarius (strain UCC118) 100.000000 PEDPA 278197 PEDPA Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) 81.000000 100.000000 LACF3 334390 LACF3 Lactobacillus fermentum (strain IFO 3956 / LMG 18251) 100.000000 LACRD 557436 LACRD Lactobacillus reuteri (strain DSM 20016) LACRJ 557433 LACRJ Lactobacillus reuteri (strain JCM 1112) 100.000000 100.000000 LACPJ 644042 LACPJ Lactobacillus plantarum (strain JDM1) LACPL 220668 LACPL Lactobacillus plantarum LACBA 387344 LACBA Lactobacillus brevis (strain ATCC 367 / JCM 1170) 100.000000 LACSS 314315 LACSS Lactobacillus sakei subsp. sakei (strain 23K) 100.000000 100.000000 LACCB 543734 LACCB Lactobacillus casei (strain BL23) LACC3 321967 LACC3 Lactobacillus casei (strain ATCC 334) 100.000000 LACRG 568703 LACRG Lactobacillus rhamnosus (strain ATCC 53103 / GG) LACRL 568704 LACRL Lactobacillus rhamnosus (strain Lc 705) 100.000000 OENOB 203123 OENOB Oenococcus oeni (strain BAA-331 / PSU-1) 100.000000 LEUMM 203120 LEUMM Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) LEUCK 349519 LEUCK Leuconostoc citreum (strain KM20) 100.000000 99.000000 100.000000 100.000000 45.000000 COPPD 309798 COPPD Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) 93.000000 100.000000 100.000000 FINM2 334413 FINM2 Finegoldia magna (strain ATCC 29328) ANAPD 525919 ANAPD Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) 69.000000 100.000000 CLOPH 357809 CLOPH Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) 100.000000 EUBR3 515619 EUBR3 Eubacterium rectale (strain ATCC 33656 / VPI 0990) EUBE2 515620 EUBE2 Eubacterium eligens (strain ATCC 27750 / VPI C15-48) 74.000000 98.000000 100.000000 100.000000 THEPX 399726 THEPX Thermoanaerobacter sp. (strain X514) THEP3 340099 THEP3 Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) THETN 273068 THETN Thermoanaerobacter tengcongensis 66.000000 64.000000 100.000000 100.000000 CLODR 645463 CLODR Clostridium difficile (strain R20291) CLOD6 272563 CLOD6 Clostridium difficile (strain 630) 100.000000 ALKOO 350688 ALKOO Alkaliphilus oremlandii (strain OhILAs) ALKMQ 293826 ALKMQ Alkaliphilus metalliredigens (strain QYMF) 100.000000 100.000000 100.000000 CLOB8 290402 CLOB8 Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) 100.000000 CLOBA 508767 CLOBA Clostridium botulinum (strain Alaska E43 / type E3) CLOBB 508765 CLOBB Clostridium botulinum (strain Eklund 17B / type B) 100.000000 CLOPS 289380 CLOPS Clostridium perfringens (strain SM101) 98.000000 CLOP1 195103 CLOP1 Clostridium perfringens (strain ATCC 13124 / NCTC 8237) CLOPE 195102 CLOPE Clostridium perfringens 94.000000 100.000000 CLONN 386415 CLONN Clostridium novyi (strain NT) 100.000000 CLOK5 431943 CLOK5 Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) 63.000000 CLOTE 212717 CLOTE Clostridium tetani 100.000000 CLOB6 515621 CLOB6 Clostridium botulinum (strain 657 / Type Ba4) 44.000000 100.000000 99.000000 100.000000 CLOB1 441770 CLOB1 Clostridium botulinum (strain ATCC 19397 / Type A) CLOBH 441771 CLOBH Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) CLOBJ 536232 CLOBJ Clostridium botulinum (strain Kyoto / Type A2) 100.000000 CLOBL 441772 CLOBL Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) CLOBK 498213 CLOBK Clostridium botulinum (strain Okra / Type B1) CLOBM 498214 CLOBM Clostridium botulinum (strain Loch Maree / Type A3) CLOAB 272562 CLOAB Clostridium acetobutylicum 100.000000 CLOTH 203119 CLOTH Clostridium thermocellum (strain ATCC 27405 / DSM 1237) CLOCE 394503 CLOCE Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) 100.000000 ANATD 521460 ANATD Anaerocellum thermophilum (strain DSM 6725 / Z-1320) CALS8 351627 CALS8 Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) HALOH 373903 HALOH Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) 63.000000 82.000000 100.000000 73.000000 SYNWW 335541 SYNWW Syntrophomonas wolfei subsp. wolfei (strain Goettingen) 100.000000 CARHZ 246194 CARHZ Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) 80.000000 100.000000 DESRM 349161 DESRM Desulfotomaculum reducens (strain MI-1) 86.000000 DESAP 477974 DESAP Desulforudis audaxviator (strain MP104C) 75.000000 DESAS 485916 DESAS Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) PELTS 370438 PELTS Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) 55.000000 HELMI 498761 HELMI Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) MOOTA 264732 MOOTA Moorella thermoacetica (strain ATCC 39073) 100.000000 DESHY 138119 DESHY Desulfitobacterium hafniense (strain Y51) DESHD 272564 DESHD Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) SYMTH 292459 SYMTH Symbiobacterium thermophilum NATTJ 457570 NATTJ Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) ALIAD 521098 ALIAD Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) 99.000000 100.000000 GEOS4 481743 GEOS4 Geobacillus sp. (strain Y412MC10) PAESJ 324057 PAESJ Paenibacillus sp. (strain JDR-2) BREBN 358681 BREBN Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) 99.000000 100.000000 MACCJ 458233 MACCJ Macrococcus caseolyticus (strain JCSC5402) 100.000000 STACT 396513 STACT Staphylococcus carnosus (strain TM300) 100.000000 STAS1 342451 STAS1 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) 100.000000 74.000000 100.000000 STAES 176280 STAES Staphylococcus epidermidis (strain ATCC 12228) STAEQ 176279 STAEQ Staphylococcus epidermidis (strain ATCC 35984 / RP62A) STAHJ 279808 STAHJ Staphylococcus haemolyticus (strain JCSC1435) 100.000000 55.000000 88.000000 93.000000 STAA8 93061 STAA8 Staphylococcus aureus (strain NCTC 8325) 37.000000 93.000000 STAAT 451516 STAAT Staphylococcus aureus (strain USA300 / TCH1516) STAA3 367830 STAA3 Staphylococcus aureus (strain USA300) 76.000000 STAAE 426430 STAAE Staphylococcus aureus (strain Newman) STAAC 93062 STAAC Staphylococcus aureus (strain COL) 100.000000 STAAS 282459 STAAS Staphylococcus aureus (strain MSSA476) STAAW 196620 STAAW Staphylococcus aureus (strain MW2) 96.000000 STAAR 282458 STAAR Staphylococcus aureus (strain MRSA252) STAAB 273036 STAAB Staphylococcus aureus (strain bovine RF122) 100.000000 STAAD 681288 STAAD Staphylococcus aureus (strain ED98) 78.000000 99.000000 STAA9 359786 STAA9 Staphylococcus aureus (strain JH9) STAA2 359787 STAA2 Staphylococcus aureus (strain JH1) 90.000000 STAAN 158879 STAAN Staphylococcus aureus (strain N315) 96.000000 STAA1 418127 STAA1 Staphylococcus aureus (strain Mu3 / ATCC 700698) STAAM 158878 STAAM Staphylococcus aureus (strain Mu50 / ATCC 700699) 100.000000 100.000000 EXIS2 262543 EXIS2 Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) EXISA 360911 EXISA Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) 69.000000 100.000000 LISW6 386043 LISW6 Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) 82.000000 LISIN 272626 LISIN Listeria innocua 100.000000 97.000000 100.000000 LISMC 634178 LISMC Listeria monocytogenes serotype 4b (strain Clip81459) LISMF 265669 LISMF Listeria monocytogenes (serotype 4b / strain F2365) 100.000000 LISM2 637381 LISM2 Listeria monocytogenes serotype 1/2a (strain 08-5923) LISMO 169963 LISMO Listeria monocytogenes LISMH 552536 LISMH Listeria monocytogenes serotype 4a (strain HCC23) 100.000000 LYSSC 444177 LYSSC Lysinibacillus sphaericus (strain C3-41) 69.000000 OCEIH 182710 OCEIH Oceanobacillus iheyensis 100.000000 100.000000 BACSK 66692 BACSK Bacillus clausii (strain KSM-K16) BACHD 272558 BACHD Bacillus halodurans 100.000000 100.000000 BACCN 315749 BACCN Bacillus cereus subsp. cytotoxis (strain NVH 391-98) 100.000000 BACWK 315730 BACWK Bacillus weihenstephanensis (strain KBAB4) 100.000000 100.000000 BACC2 405531 BACC2 Bacillus cereus (strain G9842) 100.000000 BACC4 405532 BACC4 Bacillus cereus (strain B4264) BACCR 226900 BACCR Bacillus cereus (strain ATCC 14579 / DSM 31) 100.000000 100.000000 99.000000 BACC7 405534 BACC7 Bacillus cereus (strain AH187) BACCQ 361100 BACCQ Bacillus cereus (strain Q1) BACC1 222523 BACC1 Bacillus cereus (strain ATCC 10987) 100.000000 BACCZ 288681 BACCZ Bacillus cereus (strain ZK) 100.000000 95.000000 BACC0 405535 BACC0 Bacillus cereus (strain AH820) 100.000000 BACAC 568206 BACAC Bacillus anthracis (strain CDC 684 / NRRL 3495) BACAN 261594 BACAN Bacillus anthracis 76.000000 BACHK 281309 BACHK Bacillus thuringiensis subsp. konkukian 100.000000 BACAH 412694 BACAH Bacillus thuringiensis (strain Al Hakam) BACC3 572264 BACC3 Bacillus cereus (strain 03BB102) 93.000000 100.000000 GEOSW 471223 GEOSW Geobacillus sp. (strain WCH70) 100.000000 GEOTN 420246 GEOTN Geobacillus thermodenitrificans (strain NG80-2) 100.000000 GEOSY 544556 GEOSY Geobacillus sp. (strain Y412MC61) GEOKA 1462 GEOKA Geobacillus kaustophilus 100.000000 BACP2 315750 BACP2 Bacillus pumilus (strain SAFR-032) 100.000000 BACLD 279010 BACLD Bacillus licheniformis (strain DSM 13 / ATCC 14580) 100.000000 BACA2 326423 BACA2 Bacillus amyloliquefaciens (strain FZB42) BACSU 1423 BACSU Bacillus subtilis