<?xml version="1.0" encoding="UTF-8"?>
<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"  xmlns="http://www.phyloxml.org">
<phylogeny rooted="true" rerootable="true" branch_length_unit="PAM" type="species tree">
  <name>Mammalia</name>
  <description>All Mammalia (max Length)  (only 1 isoform used)  (VPs consistent per genome-pair) , Fri Dec 23 22:20:39 2011, 39 species, 61714 orthologs, 4 top groups, 479 used here, AveVarWeighted, BestSubset, DimlessQual: best: 0.27374, ave: 0.4133 +- 0.0021, var: 0.001156, Z=-4.102</description>
  <date>2012-01-21T19:00:08+01:00</date>
  <clade branch_length="0.000000">
    <clade branch_length="0.191692">
      <confidence type="bootstrap">100.000000</confidence>
      <clade branch_length="3.310423">
        <name>SORAR</name>
        <taxonomy>
          <id>42254</id>
          <code>SORAR</code>
          <scientific_name>Sorex araneus</scientific_name>
          <common_name>Common shrew</common_name>
        </taxonomy>
      </clade>
      <clade branch_length="0.215912">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="0.144109">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="0.121816">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="0.082267">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="0.162900">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="2.481542">
                  <name>CAVPO</name>
                  <taxonomy>
                    <id>10141</id>
                    <code>CAVPO</code>
                    <scientific_name>Cavia porcellus</scientific_name>
                    <common_name>Guinea pig</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="0.019709">
                  <confidence type="bootstrap">75.000000</confidence>
                  <clade branch_length="0.097911">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="1.909718">
                      <confidence type="bootstrap">100.000000</confidence>
                      <clade branch_length="1.055322">
                        <name>RATNO</name>
                        <taxonomy>
                          <id>10116</id>
                          <code>RATNO</code>
                          <scientific_name>Rattus norvegicus</scientific_name>
                          <common_name>Rat</common_name>
                        </taxonomy>
                      </clade>
                      <clade branch_length="0.884262">
                        <name>MOUSE</name>
                        <taxonomy>
                          <id>10090</id>
                          <code>MOUSE</code>
                          <scientific_name>Mus musculus</scientific_name>
                          <common_name>Mouse</common_name>
                        </taxonomy>
                      </clade>
                    </clade>
                    <clade branch_length="2.678690">
                      <name>DIPOR</name>
                      <taxonomy>
                        <id>10020</id>
                        <code>DIPOR</code>
                        <scientific_name>Dipodomys ordii</scientific_name>
                        <common_name>Kangaroo rat</common_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="2.087247">
                    <name>SPETR</name>
                    <taxonomy>
                      <id>43179</id>
                      <code>SPETR</code>
                      <scientific_name>Spermophilus tridecemlineatus</scientific_name>
                      <common_name>Squirrel</common_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
              <clade branch_length="0.713946">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="1.546920">
                  <name>RABIT</name>
                  <taxonomy>
                    <id>9986</id>
                    <code>RABIT</code>
                    <scientific_name>Oryctolagus cuniculus</scientific_name>
                    <common_name>Rabbit</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="2.556183">
                  <name>OCHPR</name>
                  <taxonomy>
                    <id>9978</id>
                    <code>OCHPR</code>
                    <scientific_name>Ochotona princeps</scientific_name>
                    <common_name>Pika</common_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
            <clade branch_length="0.044759">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="0.128929">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="0.218902">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="1.498714">
                    <name>MICMU</name>
                    <taxonomy>
                      <id>30608</id>
                      <code>MICMU</code>
                      <scientific_name>Microcebus murinus</scientific_name>
                      <common_name>Mouse lemur</common_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="2.365004">
                    <name>OTOGA</name>
                    <taxonomy>
                      <id>30611</id>
                      <code>OTOGA</code>
                      <scientific_name>Otolemur garnettii</scientific_name>
                      <common_name>Bushbaby</common_name>
                    </taxonomy>
                  </clade>
                </clade>
                <clade branch_length="0.060360">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="2.006671">
                    <name>TARSY</name>
                    <taxonomy>
                      <id>9478</id>
                      <code>TARSY</code>
                      <scientific_name>Tarsius syrichta</scientific_name>
                      <common_name>Tarsier</common_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="0.513769">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="0.865983">
                      <name>CALJA</name>
                      <taxonomy>
                        <id>9483</id>
                        <code>CALJA</code>
                        <scientific_name>Callithrix jacchus</scientific_name>
                        <common_name>Marmoset</common_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="0.210820">
                      <confidence type="bootstrap">100.000000</confidence>
                      <clade branch_length="0.469004">
                        <name>MACMU</name>
                        <taxonomy>
                          <id>9544</id>
                          <code>MACMU</code>
                          <scientific_name>Macaca mulatta</scientific_name>
                          <common_name>Rhesus macaque</common_name>
                        </taxonomy>
                      </clade>
                      <clade branch_length="0.084995">
                        <confidence type="bootstrap">100.000000</confidence>
                        <clade branch_length="0.340803">
                          <name>NOMLE</name>
                          <taxonomy>
                            <id>61853</id>
                            <code>NOMLE</code>
                            <scientific_name>Nomascus leucogenys</scientific_name>
                            <common_name>Northern white-cheeked gibbon</common_name>
                            <synonym>Hylobates leucogenys</synonym>
                          </taxonomy>
                        </clade>
                        <clade branch_length="0.029558">
                          <confidence type="bootstrap">99.000000</confidence>
                          <clade branch_length="0.302235">
                            <name>PONAB</name>
                            <taxonomy>
                              <id>9601</id>
                              <code>PONAB</code>
                              <scientific_name>Pongo pygmaeus abelii</scientific_name>
                              <common_name>Orangutan</common_name>
                            </taxonomy>
                          </clade>
                          <clade branch_length="0.095589">
                            <confidence type="bootstrap">100.000000</confidence>
                            <clade branch_length="0.244877">
                              <name>GORGO</name>
                              <taxonomy>
                                <id>9593</id>
                                <code>GORGO</code>
                                <scientific_name>Gorilla gorilla</scientific_name>
                                <common_name>Gorilla</common_name>
                              </taxonomy>
                            </clade>
                            <clade branch_length="0.012396">
                              <confidence type="bootstrap">96.000000</confidence>
                              <clade branch_length="0.146013">
                                <name>PANTR</name>
                                <taxonomy>
                                  <id>9598</id>
                                  <code>PANTR</code>
                                  <scientific_name>Pan troglodytes</scientific_name>
                                  <common_name>Chimpanzee</common_name>
                                </taxonomy>
                              </clade>
                              <clade branch_length="0.119123">
                                <name>HUMAN</name>
                                <taxonomy>
                                  <id>9606</id>
                                  <code>HUMAN</code>
                                  <scientific_name>Homo sapiens</scientific_name>
                                  <common_name>Human</common_name>
                                </taxonomy>
                              </clade>
                            </clade>
                          </clade>
                        </clade>
                      </clade>
                    </clade>
                  </clade>
                </clade>
              </clade>
              <clade branch_length="2.275397">
                <name>TUPGB</name>
                <taxonomy>
                  <id>0</id>
                  <code>TUPGB</code>
                  <scientific_name>Tupaia belangeri</scientific_name>
                  <common_name>Tree shrew</common_name>
                </taxonomy>
              </clade>
            </clade>
          </clade>
          <clade branch_length="0.142659">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="0.049513">
              <confidence type="bootstrap">90.000000</confidence>
              <clade branch_length="2.564678">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="7.950892">
                  <name>ORNAN</name>
                  <taxonomy>
                    <id>9258</id>
                    <code>ORNAN</code>
                    <scientific_name>Ornithorhynchus anatinus</scientific_name>
                    <common_name>Platypus</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="2.202953">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="1.483344">
                    <name>MONDO</name>
                    <taxonomy>
                      <id>13616</id>
                      <code>MONDO</code>
                      <scientific_name>Monodelphis domestica</scientific_name>
                      <common_name>Opossum</common_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="0.228077">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="1.355685">
                      <name>SARHA</name>
                      <taxonomy>
                        <id>9305</id>
                        <code>SARHA</code>
                        <scientific_name>Sarcophilus harrisii</scientific_name>
                        <common_name>Tasmanian devil</common_name>
                        <synonym>Sarcophilus laniarius</synonym>
                      </taxonomy>
                    </clade>
                    <clade branch_length="2.293970">
                      <name>MACEU</name>
                      <taxonomy>
                        <id>9315</id>
                        <code>MACEU</code>
                        <scientific_name>Macropus eugenii</scientific_name>
                        <common_name>Wallaby</common_name>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
              </clade>
              <clade branch_length="0.350774">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="2.145283">
                  <name>DASNO</name>
                  <taxonomy>
                    <id>9361</id>
                    <code>DASNO</code>
                    <scientific_name>Dasypus novemcinctus</scientific_name>
                    <common_name>Armadillo</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="2.244524">
                  <name>CHOHO</name>
                  <taxonomy>
                    <id>9358</id>
                    <code>CHOHO</code>
                    <scientific_name>Choloepus hoffmanni</scientific_name>
                    <common_name>Sloth</common_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
            <clade branch_length="0.324866">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="3.950948">
                <name>ECHTE</name>
                <taxonomy>
                  <id>9371</id>
                  <code>ECHTE</code>
                  <scientific_name>Echinops telfairi</scientific_name>
                  <common_name>Tenrec</common_name>
                </taxonomy>
              </clade>
              <clade branch_length="0.363891">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="1.220531">
                  <name>LOXAF</name>
                  <taxonomy>
                    <id>9785</id>
                    <code>LOXAF</code>
                    <scientific_name>Loxodonta africana</scientific_name>
                    <common_name>African elephant</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="2.411157">
                  <name>PROCA</name>
                  <taxonomy>
                    <id>9813</id>
                    <code>PROCA</code>
                    <scientific_name>Procavia capensis</scientific_name>
                    <common_name>Hyrax</common_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
          </clade>
        </clade>
        <clade branch_length="0.045084">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="0.221751">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="1.867732">
              <name>MYOLU</name>
              <taxonomy>
                <id>59463</id>
                <code>MYOLU</code>
                <scientific_name>Myotis lucifugus</scientific_name>
                <common_name>Microbat</common_name>
              </taxonomy>
            </clade>
            <clade branch_length="1.576933">
              <name>PTEVA</name>
              <taxonomy>
                <id>132908</id>
                <code>PTEVA</code>
                <scientific_name>Pteropus vampyrus</scientific_name>
                <common_name>Megabat</common_name>
              </taxonomy>
            </clade>
          </clade>
          <clade branch_length="0.012251">
            <confidence type="bootstrap">92.000000</confidence>
            <clade branch_length="0.004445">
              <confidence type="bootstrap">53.000000</confidence>
              <clade branch_length="1.177068">
                <name>HORSE</name>
                <taxonomy>
                  <id>9796</id>
                  <code>HORSE</code>
                  <scientific_name>Equus caballus</scientific_name>
                  <common_name>Horse</common_name>
                </taxonomy>
              </clade>
              <clade branch_length="0.410635">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="1.312714">
                  <name>FELCA</name>
                  <taxonomy>
                    <id>9685</id>
                    <code>FELCA</code>
                    <scientific_name>Felis catus</scientific_name>
                    <common_name>Cat</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="0.097464">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="0.779720">
                    <name>AILME</name>
                    <taxonomy>
                      <id>9646</id>
                      <code>AILME</code>
                      <scientific_name>Ailuropoda melanoleuca</scientific_name>
                      <common_name>Giant panda</common_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="0.800747">
                    <name>CANFA</name>
                    <taxonomy>
                      <id>9615</id>
                      <code>CANFA</code>
                      <scientific_name>Canis familiaris</scientific_name>
                      <common_name>Dog</common_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
            </clade>
            <clade branch_length="0.291803">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="1.598672">
                <name>LAMPA</name>
                <taxonomy>
                  <id>30538</id>
                  <code>LAMPA</code>
                  <scientific_name>Lama guanicoe pacos</scientific_name>
                  <common_name>Alpaca</common_name>
                  <synonym>Vicugna pacos; Lama pacos</synonym>
                </taxonomy>
              </clade>
              <clade branch_length="0.041764">
                <confidence type="bootstrap">99.000000</confidence>
                <clade branch_length="0.140163">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="1.322006">
                    <name>TURTR</name>
                    <taxonomy>
                      <id>9739</id>
                      <code>TURTR</code>
                      <scientific_name>Tursiops truncatus</scientific_name>
                      <common_name>Dolphin</common_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="1.303375">
                    <name>BOVIN</name>
                    <taxonomy>
                      <id>9913</id>
                      <code>BOVIN</code>
                      <scientific_name>Bos taurus</scientific_name>
                      <common_name>Cow</common_name>
                    </taxonomy>
                  </clade>
                </clade>
                <clade branch_length="1.288314">
                  <name>PIGXX</name>
                  <taxonomy>
                    <id>9823</id>
                    <code>PIGXX</code>
                    <scientific_name>Sus scrofa</scientific_name>
                    <common_name>Pig</common_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
          </clade>
        </clade>
      </clade>
    </clade>
    <clade branch_length="3.353205">
      <name>ERIEU</name>
      <taxonomy>
        <id>9365</id>
        <code>ERIEU</code>
        <scientific_name>Erinaceus europaeus</scientific_name>
        <common_name>Hedgehog </common_name>
      </taxonomy>
    </clade>
  </clade>
</phylogeny>
</phyloxml>


