other Bacteria Other Bacteria (max Length) (only 1 isoform used) , Tue Dec 21 17:52:38 2010, 144 species, 42857 orthologs, 96 top groups, 208 used here, AveVarWeighted, BestSubset, DimlessQual: best: 1.3648, ave: 2.441 +- 0.073, var: 1.403, Z=-0.9087 2010-12-24T11:30:19+01:00 44.000000 44.000000 68.000000 97.000000 UREP2 505682 UREP2 Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) UREPA 273119 UREPA Ureaplasma parvum UREU1 565575 UREU1 Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) 32.000000 29.000000 68.000000 MYCCR 45361 MYCCR Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147) 68.000000 MYCHJ 262719 MYCHJ Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) 45.000000 MYCH7 262722 MYCH7 Mycoplasma hyopneumoniae (strain 7448) MYCH2 295358 MYCH2 Mycoplasma hyopneumoniae (strain 232) 66.000000 96.000000 MYCGH 710128 MYCGH Mycoplasma gallisepticum (strain R(high / passage 156)) MYCGA 2096 MYCGA Mycoplasma gallisepticum 71.000000 MYCPN 272634 MYCPN Mycoplasma pneumoniae MYCGE 2097 MYCGE Mycoplasma genitalium 68.000000 MYCA5 243272 MYCA5 Mycoplasma arthritidis (strain 158L3-1) MYCHP 2098 MYCHP Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) MYCMO 267748 MYCMO Mycoplasma mobile 44.000000 MYCPU 272635 MYCPU Mycoplasma pulmonis 17.000000 MYCS5 262723 MYCS5 Mycoplasma synoviae (strain 53) 18.000000 34.000000 18.000000 MYCAP 347257 MYCAP Mycoplasma agalactiae (strain PG2) 50.000000 75.000000 94.000000 100.000000 PHYAS 59748 PHYAS Phytoplasma australiense 100.000000 AYWBP 322098 AYWBP Aster yellows witches'-broom phytoplasma (strain AYWB) ONYPE 262768 ONYPE Onion yellows phytoplasma PHYMT 37692 PHYMT Phytoplasma mali (strain AT) ACHLI 441768 ACHLI Acholeplasma laidlawii (strain PG-8A) 68.000000 89.000000 100.000000 100.000000 LEPBD 523794 LEPBD Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249) SEBTE 526218 SEBTE Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) STRM9 519441 STRM9 Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) FUSNN 190304 FUSNN Fusobacterium nucleatum subsp. nucleatum 66.000000 BRAHW 565034 BRAHW Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) 82.000000 61.000000 66.000000 98.000000 UNCTG 471821 UNCTG Uncultured termite group 1 bacterium phylotype Rs-D17 ELUMP 445932 ELUMP Elusimicrobium minutum (strain Pei191) 76.000000 98.000000 100.000000 TREDE 243275 TREDE Treponema denticola 100.000000 TREPS 455434 TREPS Treponema pallidum subsp. pallidum (strain SS14) TREPA 243276 TREPA Treponema pallidum 100.000000 100.000000 100.000000 BORDL 412419 BORDL Borrelia duttonii (strain Ly) BORRA 412418 BORRA Borrelia recurrentis (strain A1) 100.000000 BORT9 314724 BORT9 Borrelia turicatae (strain 91E135) BORHD 314723 BORHD Borrelia hermsii (strain DAH) 100.000000 83.000000 BORGA 29519 BORGA Borrelia garinii 100.000000 BORBZ 445985 BORBZ Borrelia burgdorferi (strain ZS7) BORBU 224326 BORBU Borrelia burgdorferi BORAP 390236 BORAP Borrelia afzelii (strain PKo) 100.000000 PARUW 264201 PARUW Protochlamydia amoebophila (strain UWE25) 100.000000 100.000000 100.000000 CHLFF 264202 CHLFF Chlamydophila felis (strain Fe/C-56) 93.000000 CHLAB 83555 CHLAB Chlamydophila abortus CHLCV 227941 CHLCV Chlamydophila caviae 100.000000 CHLPP 406984 CHLPP Chlamydophila pneumoniae (strain LPCoLN) CHLPN 115713 CHLPN Chlamydia pneumoniae 100.000000 100.000000 93.000000 CHLTB 471473 CHLTB Chlamydia trachomatis (strain L2b/UCH-1/proctitis) CHLT2 471472 CHLT2 Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B) 100.000000 100.000000 CHLTJ 580049 CHLTJ Chlamydia trachomatis (strain B/Jali20/OT) CHLTA 315277 CHLTA Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) CHLTR 272561 CHLTR Chlamydia trachomatis CHLMU 83560 CHLMU Chlamydia muridarum 53.000000 75.000000 100.000000 100.000000 LEPBP 456481 LEPBP Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) LEPBA 355278 LEPBA Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) 100.000000 100.000000 LEPBJ 355277 LEPBJ Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) LEPBL 355276 LEPBL Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) 100.000000 LEPIC 267671 LEPIC Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni LEPIN 189518 LEPIN Leptospira interrogans 26.000000 58.000000 62.000000 METI4 481448 METI4 Methylokorus infernorum (strain V4) 94.000000 OPITP 452637 OPITP Opitutus terrae (strain DSM 11246 / PB90-1) AKKM8 349741 AKKM8 Akkermansia muciniphila (strain ATCC BAA-835) 95.000000 100.000000 SOLUE 234267 SOLUE Solibacter usitatus (strain Ellin6076) 100.000000 ACIBL 204669 ACIBL Acidobacteria bacterium (strain Ellin345) ACIC5 240015 ACIC5 Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) 66.000000 100.000000 RHOBA 265606 RHOBA Rhodopirellula baltica PLAL2 521674 PLAL2 Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) 100.000000 100.000000 97.000000 THET1 525904 THET1 Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) 98.000000 100.000000 HERA2 316274 HERA2 Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) 100.000000 100.000000 ROSCS 383372 ROSCS Roseiflexus castenholzii (strain DSM 13941 / HLO8) ROSS1 357808 ROSS1 Roseiflexus sp. (strain RS-1) 100.000000 CHLAD 326427 CHLAD Chloroflexus aggregans (strain MD-66 / DSM 9485) 100.000000 CHLSY 480224 CHLSY Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) CHLAA 324602 CHLAA Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) 100.000000 THERP 309801 THERP Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) SPHTD 479434 SPHTD Sphaerobacter thermophilus (strain DSM 20745 / S 6022) 100.000000 100.000000 DEHSB 216389 DEHSB Dehalococcoides sp. (strain BAV1) DEHSC 255470 DEHSC Dehalococcoides sp. (strain CBDB1) 100.000000 DEHSV 311424 DEHSV Dehalococcoides sp. (strain VS) DEHE1 243164 DEHE1 Dehalococcoides ethenogenes (strain 195) 100.000000 100.000000 MEIRD 504728 MEIRD Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) 100.000000 THET8 300852 THET8 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) THET2 262724 THET2 Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) 100.000000 DEIGD 319795 DEIGD Deinococcus geothermalis (strain DSM 11300) 60.000000 DEIDV 546414 DEIDV Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) DEIRA 243230 DEIRA Deinococcus radiodurans 85.000000 FIBSS 59374 FIBSS Fibrobacter succinogenes (strain ATCC 19169 / S85) 99.000000 50.000000 SALRD 309807 SALRD Salinibacter ruber (strain DSM 13855) 100.000000 CHLT3 517418 CHLT3 Chloroherpeton thalassium (strain ATCC 35110 / GB-78) 100.000000 100.000000 CHLPB 331678 CHLPB Chlorobium phaeobacteroides (strain BS1) PROA2 290512 PROA2 Prosthecochloris aestuarii (strain DSM 271 / SK 413) 100.000000 100.000000 CHLCH 340177 CHLCH Chlorobium chlorochromatii (strain CaD3) 82.000000 100.000000 PROVI 290318 PROVI Prosthecochloris vibrioformis (strain DSM 265) PELLD 319225 PELLD Pelodictyon luteolum (strain DSM 273) 92.000000 PELPB 324925 PELPB Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) 100.000000 CHLL2 290315 CHLL2 Chlorobium limicola (strain DSM 245 / NBRC 103803) CHLPD 290317 CHLPD Chlorobium phaeobacteroides (strain DSM 266) 100.000000 CHLP8 517417 CHLP8 Chlorobaculum parvum (strain NCIB 8327) CHLTE 194439 CHLTE Chlorobium tepidum 100.000000 97.000000 100.000000 SULMW 444179 SULMW Sulcia muelleri (strain GWSS) SULMS 595499 SULMS Sulcia muelleri (strain SMDSEM) BLASB 331104 BLASB Blattabacterium sp. subsp. Blattella germanica (strain Bge) 90.000000 87.000000 48.000000 AMOA5 452471 AMOA5 Amoebophilus asiaticus (strain 5a2) 94.000000 CHIPD 485918 CHIPD Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) 86.000000 PEDHD 485917 PEDHD Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) 100.000000 CYTH3 269798 CYTH3 Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) 100.000000 SPILD 504472 SPILD Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) DYAFD 471854 DYAFD Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) 99.000000 100.000000 100.000000 100.000000 FLAJ1 376686 FLAJ1 Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) FLAPJ 402612 FLAPJ Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GRAFK 411154 GRAFK Gramella forsetii (strain KT0803) CAPOD 521097 CAPOD Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) FLAB3 531844 FLAB3 Flavobacteriaceae bacterium (strain 3519-10) 100.000000 AZOPC 511995 AZOPC Azobacteroides pseudotrichonymphae genomovar. CFP2 98.000000 100.000000 PORG3 431947 PORG3 Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) PORGI 242619 PORGI Porphyromonas gingivalis 100.000000 PARD8 435591 PARD8 Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) 100.000000 BACV8 435590 BACV8 Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) 100.000000 100.000000 BACFN 272559 BACFN Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) BACFR 295405 BACFR Bacteroides fragilis BACTN 226186 BACTN Bacteroides thetaiotaomicron 100.000000 THEAS 525903 THEAS Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) AMICL 572547 AMICL Aminobacterium colombiense (strain DSM 12261 / ALA-1) 65.000000 99.000000 99.000000 PETMO 403833 PETMO Petrotoga mobilis (strain DSM 10674 / SJ95) 99.000000 THELT 416591 THELT Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) 77.000000 100.000000 100.000000 THEAB 484019 THEAB Thermosipho africanus (strain TCF52B) THEM4 391009 THEM4 Thermosipho melanesiensis (strain BI429 / DSM 12029) FERNB 381764 FERNB Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) 100.000000 100.000000 THENR 590168 THENR Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) THEP1 390874 THEP1 Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) 100.000000 THESQ 126740 THESQ Thermotoga sp. (strain RQ2) THEMA 243274 THEMA Thermotoga maritima 100.000000 DICT6 309799 DICT6 Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) DICTD 515635 DICTD Dictyoglomus turgidum (strain Z-1310 / DSM 6724) 100.000000 98.000000 THEYD 289376 THEYD Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) DEFDS 639282 DEFDS Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) 100.000000 100.000000 PERMH 123214 PERMH Persephonella marina (strain DSM 14350 / EX-H1) 100.000000 SULSY 436114 SULSY Sulfurihydrogenibium sp. (strain YO3AOP1) SULAA 204536 SULAA Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) 100.000000 HYDS0 380749 HYDS0 Hydrogenobaculum sp. (strain Y04AAS1) AQUAE 224324 AQUAE Aquifex aeolicus MYCPE 272633 MYCPE Mycoplasma penetrans 90.000000 97.000000 MYCCT 340047 MYCCT Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) MYCMS 44101 MYCMS Mycoplasma mycoides subsp. mycoides SC MESFL 265311 MESFL Mesoplasma florum