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<phylogeny rooted="true" rerootable="true" branch_length_unit="PAM" type="species tree">
  <name>other Eukaryota</name>
  <description>Eukaryota excluding Metazoa (max Length)  (only 1 isoform used)  (VPs consistent per genome-pair) , Thu Jan 12 17:12:11 2012, 45 species, 92647 orthologs, 24 top groups, 489 used here, Arithmetic, BestSubset, DimlessQual: best: 0.44355, ave: 0.8184 +- 0.0036, var: 0.003351, Z=-6.475</description>
  <date>2012-01-20T19:00:09+01:00</date>
  <clade branch_length="0.000000">
    <clade branch_length="8.561347">
      <confidence type="bootstrap">100.000000</confidence>
      <clade branch_length="1.829258">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="1.910436">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="31.779408">
            <name>MONBE</name>
            <taxonomy>
              <id>81824</id>
              <code>MONBE</code>
              <scientific_name>Monosiga brevicollis</scientific_name>
            </taxonomy>
          </clade>
          <clade branch_length="37.629223">
            <name>CAEEL</name>
            <taxonomy>
              <id>6239</id>
              <code>CAEEL</code>
              <scientific_name>Caenorhabditis elegans</scientific_name>
              <common_name>Nematode</common_name>
            </taxonomy>
          </clade>
        </clade>
        <clade branch_length="0.921637">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="0.590474">
            <confidence type="bootstrap">94.000000</confidence>
            <clade branch_length="9.325436">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="31.786992">
                <name>PLAF7</name>
                <taxonomy>
                  <id>36329</id>
                  <code>PLAF7</code>
                  <scientific_name>Plasmodium falciparum</scientific_name>
                  <common_name>Malaria parasite</common_name>
                </taxonomy>
              </clade>
              <clade branch_length="32.436599">
                <name>CRYPV</name>
                <taxonomy>
                  <id>5807</id>
                  <code>CRYPV</code>
                  <scientific_name>Cryptosporidium parvum</scientific_name>
                </taxonomy>
              </clade>
            </clade>
            <clade branch_length="0.171623">
              <confidence type="bootstrap">65.000000</confidence>
              <clade branch_length="35.679346">
                <name>DICDI</name>
                <taxonomy>
                  <id>44689</id>
                  <code>DICDI</code>
                  <scientific_name>Dictyostelium discoideum</scientific_name>
                  <common_name>Slime mold</common_name>
                </taxonomy>
              </clade>
              <clade branch_length="2.398607">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="33.340651">
                  <name>EMIHU</name>
                  <taxonomy>
                    <id>280463</id>
                    <code>EMIHU</code>
                    <scientific_name>Emiliania huxleyi CCMP1516</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="5.458310">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="15.277764">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="7.135208">
                      <confidence type="bootstrap">100.000000</confidence>
                      <clade branch_length="4.300106">
                        <name>ORYSJ</name>
                        <taxonomy>
                          <id>39947</id>
                          <code>ORYSJ</code>
                          <scientific_name>Oryza sativa Japonica Group</scientific_name>
                          <common_name>Rice</common_name>
                        </taxonomy>
                      </clade>
                      <clade branch_length="2.850711">
                        <confidence type="bootstrap">100.000000</confidence>
                        <clade branch_length="1.626733">
                          <name>SORBI</name>
                          <taxonomy>
                            <id>4558</id>
                            <code>SORBI</code>
                            <scientific_name>Sorghum bicolor</scientific_name>
                            <common_name>Sorghum</common_name>
                          </taxonomy>
                        </clade>
                        <clade branch_length="1.519243">
                          <name>MAIZE</name>
                          <taxonomy>
                            <id>4577</id>
                            <code>MAIZE</code>
                            <scientific_name>Zea mays</scientific_name>
                            <common_name>Maize</common_name>
                          </taxonomy>
                        </clade>
                      </clade>
                    </clade>
                    <clade branch_length="2.598937">
                      <confidence type="bootstrap">100.000000</confidence>
                      <clade branch_length="1.289969">
                        <confidence type="bootstrap">100.000000</confidence>
                        <clade branch_length="1.173370">
                          <confidence type="bootstrap">100.000000</confidence>
                          <clade branch_length="5.020203">
                            <name>MANES</name>
                            <taxonomy>
                              <id>3983</id>
                              <code>MANES</code>
                              <scientific_name>Manihot esculenta</scientific_name>
                              <common_name>Cassava</common_name>
                              <synonym>Manioc</synonym>
                            </taxonomy>
                          </clade>
                          <clade branch_length="5.582407">
                            <name>POPTR</name>
                            <taxonomy>
                              <id>3694</id>
                              <code>POPTR</code>
                              <scientific_name>Populus trichocarpa</scientific_name>
                              <common_name>Western balsam poplar</common_name>
                            </taxonomy>
                          </clade>
                        </clade>
                        <clade branch_length="6.431349">
                          <name>VITVI</name>
                          <taxonomy>
                            <id>29760</id>
                            <code>VITVI</code>
                            <scientific_name>Vitis vinifera</scientific_name>
                            <common_name>Grape</common_name>
                          </taxonomy>
                        </clade>
                      </clade>
                      <clade branch_length="9.160135">
                        <confidence type="bootstrap">100.000000</confidence>
                        <clade branch_length="1.222299">
                          <name>ARALY</name>
                          <taxonomy>
                            <id>59689</id>
                            <code>ARALY</code>
                            <scientific_name>Arabidopsis lyrata</scientific_name>
                            <common_name>Lyre-leaved rock-cress</common_name>
                          </taxonomy>
                        </clade>
                        <clade branch_length="1.179611">
                          <name>ARATH</name>
                          <taxonomy>
                            <id>3702</id>
                            <code>ARATH</code>
                            <scientific_name>Arabidopsis thaliana</scientific_name>
                            <common_name>Thale cress / Mouse-ear cress</common_name>
                          </taxonomy>
                        </clade>
                      </clade>
                    </clade>
                  </clade>
                  <clade branch_length="1.167695">
                    <confidence type="bootstrap">92.000000</confidence>
                    <clade branch_length="20.721845">
                      <confidence type="bootstrap">100.000000</confidence>
                      <clade branch_length="8.816471">
                        <name>OSTTA</name>
                        <taxonomy>
                          <id>70448</id>
                          <code>OSTTA</code>
                          <scientific_name>Ostreococcus tauri</scientific_name>
                        </taxonomy>
                      </clade>
                      <clade branch_length="8.137131">
                        <name>OSTLU</name>
                        <taxonomy>
                          <id>436017</id>
                          <code>OSTLU</code>
                          <scientific_name>Ostreococcus lucimarinus</scientific_name>
                        </taxonomy>
                      </clade>
                    </clade>
                    <clade branch_length="24.522299">
                      <name>CHLRE</name>
                      <taxonomy>
                        <id>3055</id>
                        <code>CHLRE</code>
                        <scientific_name>Chlamydomonas reinhardtii</scientific_name>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
              </clade>
            </clade>
          </clade>
          <clade branch_length="3.238385">
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            <clade branch_length="27.936437">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="20.208764">
                <name>TRYBB</name>
                <taxonomy>
                  <id>5702</id>
                  <code>TRYBB</code>
                  <scientific_name>Trypanosoma brucei</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="15.458095">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="4.685892">
                  <name>LEIBR</name>
                  <taxonomy>
                    <id>5660</id>
                    <code>LEIBR</code>
                    <scientific_name>Leishmania braziliensis</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="3.207222">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="1.243233">
                    <name>LEIIN</name>
                    <taxonomy>
                      <id>5671</id>
                      <code>LEIIN</code>
                      <scientific_name>Leishmania infantum</scientific_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="1.571633">
                    <name>LEIMA</name>
                    <taxonomy>
                      <id>5664</id>
                      <code>LEIMA</code>
                      <scientific_name>Leishmania major</scientific_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
            </clade>
            <clade branch_length="52.616136">
              <name>GIALA</name>
              <taxonomy>
                <id>184922</id>
                <code>GIALA</code>
                <scientific_name>Giardia lamblia</scientific_name>
                <synonym>Giardia intestinalis</synonym>
              </taxonomy>
            </clade>
          </clade>
        </clade>
      </clade>
      <clade branch_length="6.347848">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="5.125014">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="25.063402">
            <name>PUCGT</name>
            <taxonomy>
              <id>418459</id>
              <code>PUCGT</code>
              <scientific_name>Puccinia graminis f. sp. tritici</scientific_name>
              <common_name>Black rust</common_name>
            </taxonomy>
          </clade>
          <clade branch_length="0.703302">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="21.816644">
              <name>USTMA</name>
              <taxonomy>
                <id>237631</id>
                <code>USTMA</code>
                <scientific_name>Ustilago maydis</scientific_name>
              </taxonomy>
            </clade>
            <clade branch_length="1.546444">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="22.404693">
                <name>CRYNE</name>
                <taxonomy>
                  <id>5207</id>
                  <code>CRYNE</code>
                  <scientific_name>Cryptococcus neoformans</scientific_name>
                  <synonym>Filobasidiella neoformans</synonym>
                </taxonomy>
              </clade>
              <clade branch_length="11.103097">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="10.116633">
                  <name>LACBI</name>
                  <taxonomy>
                    <id>29883</id>
                    <code>LACBI</code>
                    <scientific_name>Laccaria bicolor</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="10.913234">
                  <name>AGABI</name>
                  <taxonomy>
                    <id>192523</id>
                    <code>AGABI</code>
                    <scientific_name>Agaricus bisporus</scientific_name>
                    <common_name>Common mushroom</common_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
          </clade>
        </clade>
        <clade branch_length="2.840908">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="0.920679">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="9.488545">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="0.405983">
                <confidence type="bootstrap">99.000000</confidence>
                <clade branch_length="1.696423">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="15.518430">
                    <name>PHANO</name>
                    <taxonomy>
                      <id>321614</id>
                      <code>PHANO</code>
                      <scientific_name>Phaeosphaeria nodorum</scientific_name>
                      <synonym>Stagonospora nodorum</synonym>
                    </taxonomy>
                  </clade>
                  <clade branch_length="15.817686">
                    <name>MYCGR</name>
                    <taxonomy>
                      <id>54734</id>
                      <code>MYCGR</code>
                      <scientific_name>Mycosphaerella graminicola</scientific_name>
                      <synonym>Septoria tritici</synonym>
                    </taxonomy>
                  </clade>
                </clade>
                <clade branch_length="9.592593">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="7.388787">
                    <name>EMENI</name>
                    <taxonomy>
                      <id>162425</id>
                      <code>EMENI</code>
                      <scientific_name>Emericella nidulans</scientific_name>
                      <synonym>Aspergillus nidulans</synonym>
                    </taxonomy>
                  </clade>
                  <clade branch_length="6.666914">
                    <name>ASPFU</name>
                    <taxonomy>
                      <id>330879</id>
                      <code>ASPFU</code>
                      <scientific_name>Aspergillus fumigatus</scientific_name>
                      <synonym>Sartorya fumigata</synonym>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
              <clade branch_length="2.577449">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="12.523050">
                  <name>BOTFB</name>
                  <taxonomy>
                    <id>332648</id>
                    <code>BOTFB</code>
                    <scientific_name>Botrytis cinerea</scientific_name>
                    <synonym>Botryotinia fuckeliana</synonym>
                  </taxonomy>
                </clade>
                <clade branch_length="3.698966">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="11.398730">
                    <name>MAGGR</name>
                    <taxonomy>
                      <id>148305</id>
                      <code>MAGGR</code>
                      <scientific_name>Magnaporthe grisea</scientific_name>
                      <common_name>rice blast fungus</common_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="12.257945">
                    <name>NEUCR</name>
                    <taxonomy>
                      <id>5141</id>
                      <code>NEUCR</code>
                      <scientific_name>Neurospora crassa</scientific_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
            </clade>
            <clade branch_length="4.982835">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="22.405576">
                <name>YARLI</name>
                <taxonomy>
                  <id>284591</id>
                  <code>YARLI</code>
                  <scientific_name>Yarrowia lipolytica</scientific_name>
                  <synonym>Candida lipolytica</synonym>
                </taxonomy>
              </clade>
              <clade branch_length="4.418509">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="7.622471">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="2.884984">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="10.864106">
                      <name>CANGA</name>
                      <taxonomy>
                        <id>5478</id>
                        <code>CANGA</code>
                        <scientific_name>Candida glabrata</scientific_name>
                        <common_name>Yeast</common_name>
                        <synonym>Torulopsis glabrata</synonym>
                      </taxonomy>
                    </clade>
                    <clade branch_length="10.637855">
                      <name>YEAST</name>
                      <taxonomy>
                        <id>4932</id>
                        <code>YEAST</code>
                        <scientific_name>Saccharomyces cerevisiae</scientific_name>
                        <common_name>Baker's yeast</common_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="0.652294">
                    <confidence type="bootstrap">99.000000</confidence>
                    <clade branch_length="12.214601">
                      <name>KLULA</name>
                      <taxonomy>
                        <id>284590</id>
                        <code>KLULA</code>
                        <scientific_name>Kluyveromyces lactis</scientific_name>
                        <common_name>Yeast</common_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="13.806467">
                      <name>ASHGO</name>
                      <taxonomy>
                        <id>284811</id>
                        <code>ASHGO</code>
                        <scientific_name>Ashbya gossypii</scientific_name>
                        <common_name>Yeast</common_name>
                        <synonym>Eremothecium gossypii</synonym>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
                <clade branch_length="8.556679">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="2.050755">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="10.202254">
                      <name>LODEL</name>
                      <taxonomy>
                        <id>379508</id>
                        <code>LODEL</code>
                        <scientific_name>Lodderomyces elongisporus</scientific_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="8.966855">
                      <name>CANAL</name>
                      <taxonomy>
                        <id>5476</id>
                        <code>CANAL</code>
                        <scientific_name>Candida albicans</scientific_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="1.225796">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="9.045206">
                      <name>PICST</name>
                      <taxonomy>
                        <id>322104</id>
                        <code>PICST</code>
                        <scientific_name>Pichia stipitis</scientific_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="10.632155">
                      <name>DEBHA</name>
                      <taxonomy>
                        <id>4959</id>
                        <code>DEBHA</code>
                        <scientific_name>Debaryomyces hansenii</scientific_name>
                        <synonym>Torulaspora hansenii</synonym>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
              </clade>
            </clade>
          </clade>
          <clade branch_length="28.173611">
            <name>SCHPO</name>
            <taxonomy>
              <id>4896</id>
              <code>SCHPO</code>
              <scientific_name>Schizosaccharomyces pombe</scientific_name>
              <common_name>Fission yeast</common_name>
            </taxonomy>
          </clade>
        </clade>
      </clade>
    </clade>
    <clade branch_length="48.925397">
      <name>ENCCU</name>
      <taxonomy>
        <id>6035</id>
        <code>ENCCU</code>
        <scientific_name>Encephalitozoon cuniculi</scientific_name>
      </taxonomy>
    </clade>
  </clade>
</phylogeny>
</phyloxml>


