other Proteobacteria Other Proteobacteria (max Length) (only 1 isoform used) , Tue Mar 8 06:10:21 2011, 236 species, 89463 orthologs, 156 top groups, 451 used here, AveVarWeighted, BestSubset, DimlessQual: best: 0.41814, ave: 0.5786 +- 0.0025, var: 0.001664, Z=-3.934 2011-04-02T17:00:24+02:00 100.000000 82.000000 NITSB 387092 NITSB Nitratiruptor sp. (strain SB155-2) 53.000000 67.000000 58.000000 100.000000 100.000000 HELHP 235279 HELHP Helicobacter hepaticus 100.000000 HELAH 382638 HELAH Helicobacter acinonychis (strain Sheeba) 99.000000 HELPS 512562 HELPS Helicobacter pylori (strain Shi470) 58.000000 HELPJ 85963 HELPJ Helicobacter pylori J99 Campylobacter pylori J99 52.000000 50.000000 HELPH 357544 HELPH Helicobacter pylori (strain HPAG1) 24.000000 49.000000 HELPY 85962 HELPY Helicobacter pylori HELPB 592205 HELPB Helicobacter pylori (strain B38) HELP2 570508 HELP2 Helicobacter pylori (strain P12) HELPG 563041 HELPG Helicobacter pylori (strain G27) WOLSU 273121 WOLSU Wolinella succinogenes 100.000000 SULD5 525898 SULD5 Sulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175) 100.000000 99.000000 41.000000 100.000000 CAMC5 360105 CAMC5 Campylobacter curvus (strain 525.92) CAMC1 360104 CAMC1 Campylobacter concisus (strain 13826) CAMFF 360106 CAMFF Campylobacter fetus subsp. fetus (strain 82-40) CAMHC 360107 CAMHC Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) 100.000000 CAMLR 306263 CAMLR Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) 100.000000 44.000000 CAMJR 195099 CAMJR Campylobacter jejuni (strain RM1221) 45.000000 35.000000 CAMJ8 407148 CAMJ8 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) CAMJD 360109 CAMJD Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) CAMJJ 354242 CAMJJ Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) CAMJE 192222 CAMJE Campylobacter jejuni ARCB4 367737 ARCB4 Arcobacter butzleri (strain RM4018) 61.000000 SULNB 387093 SULNB Sulfurovum sp. (strain NBC37-1) SULDN 326298 SULDN Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) NAUPA 598659 NAUPA Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) 100.000000 86.000000 100.000000 98.000000 SORC5 448385 SORC5 Sorangium cellulosum (strain So ce56) 100.000000 100.000000 100.000000 100.000000 ANASK 447217 ANASK Anaeromyxobacter sp. (strain K) ANAD2 455488 ANAD2 Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) ANADE 290397 ANADE Anaeromyxobacter dehalogenans (strain 2CP-C) ANADF 404589 ANADF Anaeromyxobacter sp. (strain Fw109-5) MYXXD 246197 MYXXD Myxococcus xanthus (strain DK 1622) 99.000000 43.000000 100.000000 DESMR 573370 DESMR Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) 100.000000 LAWIP 363253 LAWIP Lawsonia intracellularis (strain PHE/MN1-00) 100.000000 DESDG 207559 DESDG Desulfovibrio desulfuricans (strain G20) 100.000000 DESVM 883 DESVM Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) 100.000000 DESVV 391774 DESVV Desulfovibrio vulgaris subsp. vulgaris (strain DP4) DESVH 882 DESVH Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) 97.000000 76.000000 100.000000 DESAA 439235 DESAA Desulfatibacillum alkenivorans (strain AK-01) 100.000000 DESAH 177437 DESAH Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) DESOH 96561 DESOH Desulfococcus oleovorans (strain DSM 6200 / Hxd3) SYNFM 335543 SYNFM Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) DESPS 177439 DESPS Desulfotalea psychrophila 55.000000 100.000000 PELCD 338963 PELCD Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) 100.000000 100.000000 PELPD 338966 PELPD Pelobacter propionicus (strain DSM 2379) GEOLS 398767 GEOLS Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) 100.000000 93.000000 100.000000 GEOBB 404380 GEOBB Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GEOSM 443144 GEOSM Geobacter sp. (strain M21) 100.000000 GEOUR 351605 GEOUR Geobacter uraniumreducens (strain Rf4) GEOSF 316067 GEOSF Geobacter sp. (strain FRC-32) 100.000000 GEOMG 269799 GEOMG Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GEOSL 243231 GEOSL Geobacter sulfurreducens SYNAS 56780 SYNAS Syntrophus aciditrophicus (strain SB) BDEBA 264462 BDEBA Bdellovibrio bacteriovorus 100.000000 MAGSM 156889 MAGSM Magnetococcus sp. (strain MC-1) 65.000000 100.000000 100.000000 92.000000 100.000000 DECAR 159087 DECAR Dechloromonas aromatica (strain RCB) 100.000000 AZOSE 0 AZOSE Azoarcus sp. (strain EbN1) 100.000000 AZOSB 62928 AZOSB Azoarcus sp. (strain BH72) THASP 85643 THASP Thauera sp. (strain MZ1T) 100.000000 THIDA 292415 THIDA Thiobacillus denitrificans (strain ATCC 25259) 59.000000 100.000000 NITMU 323848 NITMU Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) 100.000000 NITEC 335283 NITEC Nitrosomonas eutropha (strain C71) NITEU 228410 NITEU Nitrosomonas europaea 100.000000 100.000000 METFK 265072 METFK Methylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875) METSD 582744 METSD Methylovorus sp. (strain SIP3-4) METML 583345 METML Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) 100.000000 100.000000 100.000000 100.000000 DELAS 398578 DELAS Delftia acidovorans (strain DSM 14801 / SPH-1) 67.000000 100.000000 ACIAC 397945 ACIAC Acidovorax avenae subsp. citrulli (strain AAC00-1) 100.000000 ACIET 535289 ACIET Acidovorax ebreus (strain TPSY) ACISJ 232721 ACISJ Acidovorax sp. (strain JS42) VEREI 391735 VEREI Verminephrobacter eiseniae (strain EF01-2) 100.000000 RHOFD 338969 RHOFD Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) 100.000000 POLNA 365044 POLNA Polaromonas naphthalenivorans (strain CJ2) POLSJ 296591 POLSJ Polaromonas sp. (strain JS666 / ATCC BAA-500) 100.000000 METPP 420662 METPP Methylibium petroleiphilum (strain PM1) LEPCP 395495 LEPCP Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) 79.000000 100.000000 BORA1 360910 BORA1 Bordetella avium (strain 197N) 100.000000 BORPD 340100 BORPD Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) 100.000000 BORPA 257311 BORPA Bordetella parapertussis 46.000000 BORBR 518 BORBR Bordetella bronchiseptica BORPE 520 BORPE Bordetella pertussis 100.000000 100.000000 POLSQ 312153 POLSQ Polynucleobacter sp. (strain QLW-P1DMWA-1) POLNS 452638 POLNS Polynucleobacter necessarius (strain STIR1) 53.000000 100.000000 JANMA 375286 JANMA Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis) HERAR 204773 HERAR Herminiimonas arsenicoxydans 100.000000 100.000000 100.000000 RALME 266264 RALME Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) 100.000000 100.000000 CUPTR 164546 CUPTR Cupriavidus taiwanensis (strain R1 / LMG 19424) RALEH 0 RALEH Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RALEJ 0 RALEJ Ralstonia eutropha (strain JMP134) Alcaligenes eutrophus 100.000000 RALSO 267608 RALSO Ralstonia solanacearum 100.000000 RALPJ 402626 RALPJ Ralstonia pickettii (strain 12J) RALP1 428406 RALP1 Ralstonia pickettii (strain 12D) 100.000000 100.000000 BURP8 391038 BURP8 Burkholderia phymatum (strain DSM 17167 / STM815) 100.000000 BURXL 266265 BURXL Burkholderia xenovorans (strain LB400) BURPP 398527 BURPP Burkholderia phytofirmans (strain DSM 17436 / PsJN) 100.000000 BURGB 626418 BURGB Burkholderia glumae (strain BGR1) 100.000000 100.000000 BURM1 395019 BURM1 Burkholderia multivorans (strain ATCC 17616 / 249) 100.000000 100.000000 100.000000 BURA4 398577 BURA4 Burkholderia ambifaria (strain MC40-6) BURCM 339670 BURCM Burkholderia cepacia (strain ATCC 53795 / AMMD) 100.000000 BURS3 269483 BURS3 Burkholderia sp. (strain 383) 100.000000 BURCJ 216591 BURCJ Burkholderia cepacia (strain J2315 / LMG 16656) 100.000000 BURCC 406425 BURCC Burkholderia cenocepacia (strain MC0-3) 100.000000 BURCH 331272 BURCH Burkholderia cenocepacia (strain HI2424) BURCA 331271 BURCA Burkholderia cenocepacia (strain AU 1054) BURVG 269482 BURVG Burkholderia vietnamiensis (strain G4 / LMG 22486) 100.000000 BURTA 271848 BURTA Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) 100.000000 BURP1 320372 BURP1 Burkholderia pseudomallei (strain 1710b) 88.000000 BURP0 357348 BURP0 Burkholderia pseudomallei (strain 1106a) 38.000000 BURP6 320373 BURP6 Burkholderia pseudomallei (strain 668) 38.000000 99.000000 BURMA 13373 BURMA Burkholderia mallei 98.000000 BURMS 320388 BURMS Burkholderia mallei (strain SAVP1) 100.000000 BURM9 412022 BURM9 Burkholderia mallei (strain NCTC 10229) BURM7 320389 BURM7 Burkholderia mallei (strain NCTC 10247) BURPS 272560 BURPS Burkholderia pseudomallei 100.000000 100.000000 CHRVO 243365 CHRVO Chromobacterium violaceum LARHH 557598 LARHH Laribacter hongkongensis (strain HLHK9) 100.000000 100.000000 NEIG2 521006 NEIG2 Neisseria gonorrhoeae (strain NCCP11945) NEIG1 242231 NEIG1 Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) 100.000000 NEIMA 65699 NEIMA Neisseria meningitidis serogroup A 78.000000 NEIML 487 NEIML Neisseria meningitidis (strain alpha14) 62.000000 43.000000 NEIM0 374833 NEIM0 Neisseria meningitidis serogroup C (strain 053442) NEIMB 122586 NEIMB Neisseria meningitidis serogroup B NEIMF 272831 NEIMF Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) 100.000000 100.000000 100.000000 100.000000 100.000000 100.000000 ANAPZ 212042 ANAPZ Anaplasma phagocytophilum (strain HZ) ANAMM 234826 ANAMM Anaplasma marginale (strain St. Maries) 100.000000 100.000000 EHRCR 205920 EHRCR Ehrlichia chaffeensis (strain Arkansas) EHRCJ 269484 EHRCJ Ehrlichia canis (strain Jake) 100.000000 EHRRG 302409 EHRRG Ehrlichia ruminantium (strain Gardel) EHRRW 254945 EHRRW Ehrlichia ruminantium (strain Welgevonden) 100.000000 WOLTR 292805 WOLTR Wolbachia sp. (subsp. Brugia malayi) (strain TRS) 100.000000 WOLPP 570417 WOLPP Wolbachia pipientis subsp. Culex pipiens (strain wPip) 100.000000 WOLWR 66084 WOLWR Wolbachia sp. subsp. Drosophila simulans (strain wRi) WOLPM 66077 WOLPM Wolbachia pipientis wMel 100.000000 NEOSM 222891 NEOSM Neorickettsia sennetsu (strain Miyayama) NEORI 434131 NEORI Neorickettsia risticii (strain Illinois) 100.000000 100.000000 ORITI 334380 ORITI Orientia tsutsugamushi (strain Ikeda) ORITB 357244 ORITB Orientia tsutsugamushi (strain Boryong) 100.000000 100.000000 RICB8 391896 RICB8 Rickettsia bellii (strain OSU 85-389) RICBR 336407 RICBR Rickettsia bellii (strain RML369-C) 100.000000 100.000000 RICPR 272947 RICPR Rickettsia prowazekii RICTY 257363 RICTY Rickettsia typhi 100.000000 RICCK 293613 RICCK Rickettsia canadensis (strain McKiel) 100.000000 RICAH 293614 RICAH Rickettsia akari (strain Hartford) 100.000000 RICFE 42862 RICFE Rickettsia felis Rickettsia azadi 100.000000 RICM5 416276 RICM5 Rickettsia massiliae (strain Mtu5) 100.000000 100.000000 RICAE 347255 RICAE Rickettsia africae (strain ESF-5) RICCN 272944 RICCN Rickettsia conorii 96.000000 100.000000 RICRO 452659 RICRO Rickettsia rickettsii (strain Iowa) RICRS 392021 RICRS Rickettsia rickettsii (strain Sheila Smith) RICPU 562019 RICPU Rickettsia peacockii (strain Rustic) 93.000000 PELUB 198252 PELUB Pelagibacter ubique 100.000000 67.000000 PUNMI 488538 PUNMI Puniceispirillum marinum (strain IMCC1322) 100.000000 100.000000 ACICJ 349163 ACICJ Acidiphilium cryptum (strain JF-5) 90.000000 GRABC 391165 GRABC Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) 100.000000 100.000000 GLUDA 272568 GLUDA Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) ACEP3 634452 ACEP3 Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GLUOX 442 GLUOX Gluconobacter oxydans Gluconobacter suboxydans 100.000000 100.000000 RHORT 269796 RHORT Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) MAGSA 342108 MAGSA Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RHOCS 414684 RHOCS Rhodospirillum centenum (strain ATCC 51521 / SW) 100.000000 100.000000 100.000000 100.000000 PHEZH 450851 PHEZH Phenylobacterium zucineum (strain HLK1) 100.000000 CAUSK 366602 CAUSK Caulobacter sp. (strain K31) 100.000000 CAUCN 565050 CAUCN Caulobacter crescentus (strain NA1000 / CB15N) CAUCR 190650 CAUCR Caulobacter crescentus 94.000000 MARMM 394221 MARMM Maricaulis maris (strain MCS10) 100.000000 HYPNA 228405 HYPNA Hyphomonas neptunium (strain ATCC 15444) HIRBI 582402 HIRBI Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) 85.000000 100.000000 98.000000 PARDP 318586 PARDP Paracoccus denitrificans (strain Pd 1222) 100.000000 RHOS5 349102 RHOS5 Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) 100.000000 RHOSK 557760 RHOSK Rhodobacter sphaeroides (strain KD131 / KCTC 12085) 100.000000 RHOS1 349101 RHOS1 Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RHOS4 272943 RHOS4 Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) 100.000000 JANSC 290400 JANSC Jannaschia sp. (strain CCS1) 72.000000 DINSH 398580 DINSH Dinoroseobacter shibae (strain DFL 12) 100.000000 ROSDO 375451 ROSDO Roseobacter denitrificans (strain ATCC 33942 / OCh 114) 100.000000 SILST 292414 SILST Silicibacter sp. (strain TM1040) SILPO 89184 SILPO Silicibacter pomeroyi 100.000000 100.000000 100.000000 100.000000 BARBK 360095 BARBK Bartonella bacilliformis (strain ATCC 35685 / KC583) 100.000000 100.000000 BART1 382640 BART1 Bartonella tribocorum (strain CIP 105476 / IBS 506) BARGA 634504 BARGA Bartonella grahamii (strain as4aup) 100.000000 BARQU 283165 BARQU Bartonella quintana BARHE 38323 BARHE Bartonella henselae Rochalimaea henselae 100.000000 100.000000 100.000000 MESSB 266779 MESSB Mesorhizobium sp. (strain BNC1) RHILO 381 RHILO Rhizobium loti Mesorhizobium loti 100.000000 OCHA4 439375 OCHA4 Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) 100.000000 27.000000 100.000000 BRUA2 359391 BRUA2 Brucella abortus (strain 2308) 57.000000 BRUA1 430066 BRUA1 Brucella abortus (strain S19) BRUAB 235 BRUAB Brucella abortus 56.000000 94.000000 100.000000 100.000000 BRUC2 483179 BRUC2 Brucella canis (strain ATCC 23365 / NCTC 10854) BRUSU 29461 BRUSU Brucella suis BRUSI 470137 BRUSI Brucella suis (strain ATCC 23445 / NCTC 10510) BRUMC 568815 BRUMC Brucella microti (strain CCM 4915) BRUO2 444178 BRUO2 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) 99.000000 BRUMB 546272 BRUMB Brucella melitensis biotype 2 (strain ATCC 23457) BRUME 29459 BRUME Brucella melitensis 100.000000 100.000000 RHISN 394 RHISN Rhizobium sp. (strain NGR234) 100.000000 SINMW 366394 SINMW Sinorhizobium medicae (strain WSM419) RHIME 382 RHIME Rhizobium meliloti Sinorhizobium meliloti 78.000000 89.000000 AGRT5 176299 AGRT5 Agrobacterium tumefaciens (strain C58 / ATCC 33970) 100.000000 AGRRK 311403 AGRRK Agrobacterium radiobacter (strain K84 / ATCC BAA-868) 100.000000 100.000000 RHIE6 491916 RHIE6 Rhizobium etli (strain CIAT 652) RHIEC 347834 RHIEC Rhizobium etli (strain CFN 42 / ATCC 51251) 100.000000 100.000000 RHILS 395491 RHILS Rhizobium leguminosarum bv. trifolii (strain WSM1325) RHIL3 216596 RHIL3 Rhizobium leguminosarum bv. viciae (strain 3841) RHILW 395492 RHILW Rhizobium leguminosarum bv. trifolii (strain WSM2304) AGRVS 311402 AGRVS Agrobacterium vitis (strain S4 / ATCC BAA-846) 100.000000 100.000000 100.000000 METSB 395965 METSB Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) BEII9 395963 BEII9 Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) 100.000000 100.000000 METNO 460265 METNO Methylobacterium nodulans (strain ORS2060 / LMG 21967) METS4 426117 METS4 Methylobacterium sp. (strain 4-46) 100.000000 METRJ 426355 METRJ Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) 100.000000 100.000000 METED 661410 METED Methylobacterium extorquens (strain DSM 5838 / DM4) 65.000000 METC4 440085 METC4 Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) 51.000000 METEA 272630 METEA Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) METEP 419610 METEP Methylobacterium extorquens (strain PA1) METPB 441620 METPB Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) 100.000000 100.000000 AZOC5 438753 AZOC5 Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) XANP2 78245 XANP2 Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) 100.000000 OLICO 504832 OLICO Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) 100.000000 100.000000 100.000000 RHOP5 316055 RHOP5 Rhodopseudomonas palustris (strain BisA53) RHOPB 316056 RHOPB Rhodopseudomonas palustris (strain BisB18) 100.000000 100.000000 RHOPS 316057 RHOPS Rhodopseudomonas palustris (strain BisB5) RHOP2 316058 RHOP2 Rhodopseudomonas palustris (strain HaA2) 100.000000 RHOPT 395960 RHOPT Rhodopseudomonas palustris (strain TIE-1) RHOPA 258594 RHOPA Rhodopseudomonas palustris 78.000000 100.000000 NITHX 323097 NITHX Nitrobacter hamburgensis (strain X14 / DSM 10229) NITWN 323098 NITWN Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) 100.000000 100.000000 BRASB 288000 BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) BRASO 114615 BRASO Bradyrhizobium sp. (strain ORS278) BRAJA 224911 BRAJA Bradyrhizobium japonicum PARL1 402881 PARL1 Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) 100.000000 ZYMMO 542 ZYMMO Zymomonas mobilis 100.000000 98.000000 SPHAL 117207 SPHAL Sphingopyxis alaskensis 100.000000 ERYLH 314225 ERYLH Erythrobacter litoralis (strain HTCC2594) NOVAD 279238 NOVAD Novosphingobium aromaticivorans (strain DSM 12444) SPHWW 392499 SPHWW Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)