Archaea All Archaeal genomes (max Length) (only 1 isoform used) , Sat Jan 30 14:33:04 2010, 69 species, 19681 orthologs, 18 top groups, 199 used here, Weighted, BestSubset, DimlessQual: best: 1.6454, ave: 1.752 +- 0.012, var: 0.04041, Z=-0.5293 2010-02-03T00:05:15+01:00 100.000000 72.000000 87.000000 100.000000 NANEQ 228908 NANEQ Nanoarchaeum equitans 57.000000 100.000000 NITMS 436308 NITMS Nitrosopumilus maritimus (strain SCM1) CENSY 46770 CENSY Cenarchaeum symbiosum 100.000000 KORCO 374847 KORCO Korarchaeum cryptofilum (strain OPF8) 100.000000 THEPD 368408 THEPD Thermofilum pendens (strain Hrk 5) 94.000000 100.000000 100.000000 IGNH4 453591 IGNH4 Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) 91.000000 100.000000 STAMF 399550 STAMF Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) DESK1 490899 DESK1 Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) 100.000000 HYPBU 415426 HYPBU Hyperthermus butylicus (strain DSM 5456 / JCM 9403) AERPE 56636 AERPE Aeropyrum pernix 100.000000 METS5 399549 METS5 Metallosphaera sedula (strain ATCC 51363 / DSM 5348) 100.000000 100.000000 SULAC 2285 SULAC Sulfolobus acidocaldarius SULTO 111955 SULTO Sulfolobus tokodaii 100.000000 SULSO 273057 SULSO Sulfolobus solfataricus 100.000000 88.000000 100.000000 SULIK 426118 SULIK Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) 99.000000 SULIM 427317 SULIM Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) SULIA 427318 SULIA Sulfolobus islandicus (strain M.16.27) 42.000000 SULIN 419942 SULIN Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) SULIY 439386 SULIY Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) SULIL 429572 SULIL Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) 100.000000 CALMQ 397948 CALMQ Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) 100.000000 PYRCJ 410359 PYRCJ Pyrobaculum calidifontis (strain JCM 11548 / VA1) 57.000000 100.000000 THENV 444157 THENV Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) PYRIL 384616 PYRIL Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) 100.000000 PYRAR 340102 PYRAR Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) PYRAE 178306 PYRAE Pyrobaculum aerophilum 100.000000 THESM 604354 THESM Thermococcus sibiricus (strain MM 739 / DSM 12597) 65.000000 100.000000 THEON 523850 THEON Thermococcus onnurineus (strain NA1) 100.000000 THEGJ 593117 THEGJ Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) PYRKO 311400 PYRKO Thermococcus kodakaraensis Pyrococcus kodakaraensis 100.000000 PYRFU 2261 PYRFU Pyrococcus furiosus 100.000000 PYRAB 29292 PYRAB Pyrococcus abyssi PYRHO 53953 PYRHO Pyrococcus horikoshii METKA 190192 METKA Methanopyrus kandleri 100.000000 100.000000 100.000000 METTH 187420 METTH Methanobacterium thermoautotrophicum 97.000000 METS3 420247 METS3 Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) METST 339860 METST Methanosphaera stadtmanae (strain DSM 3091) 100.000000 100.000000 META3 419665 META3 Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) 100.000000 METVS 406327 METVS Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) 100.000000 METMP 39152 METMP Methanococcus maripaludis 100.000000 100.000000 METM6 444158 METM6 Methanococcus maripaludis (strain C6 / ATCC BAA-1332) METM7 426368 METM7 Methanococcus maripaludis (strain C7 / ATCC BAA-1331) METM5 402880 METM5 Methanococcus maripaludis (strain C5 / ATCC BAA-1333) 100.000000 METVM 579137 METVM Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) 100.000000 METFA 573064 METFA Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) METJA 243232 METJA Methanocaldococcus jannaschii 100.000000 ARCFU 224325 ARCFU Archaeoglobus fulgidus 100.000000 100.000000 92.000000 100.000000 NATPD 348780 NATPD Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) 100.000000 100.000000 HALMD 485914 HALMD Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) HALMA 2238 HALMA Haloarcula marismortui HALUD 519442 HALUD Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) 100.000000 HALS3 478009 HALS3 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) HALSA 2242 HALSA Halobacterium salinarium Halobacterium halobium 91.000000 HALWD 362976 HALWD Haloquadratum walsbyi (strain DSM 16790) HALLT 416348 HALLT Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) 100.000000 100.000000 100.000000 METHJ 323259 METHJ Methanospirillum hungatei (strain JF-1 / DSM 864) 100.000000 METMJ 368407 METMJ Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) 100.000000 METPE 521011 METPE Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) METB6 456442 METB6 Methanoregula boonei (strain 6A8) METLZ 410358 METLZ Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) 100.000000 UNCMA 351160 UNCMA Uncultured methanogenic archaeon RC-I 63.000000 METTP 349307 METTP Methanosaeta thermophila (strain DSM 6194 / PT) 100.000000 METBU 259564 METBU Methanococcoides burtonii (strain DSM 6242) 100.000000 METBF 269797 METBF Methanosarcina barkeri (strain Fusaro / DSM 804) 100.000000 METAC 188937 METAC Methanosarcina acetivorans METMA 192952 METMA Methanosarcina mazei 100.000000 PICTO 263820 PICTO Picrophilus torridus 100.000000 THEAC 273075 THEAC Thermoplasma acidophilum THEVO 273116 THEVO Thermoplasma volcanium