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<phylogeny rooted="true" rerootable="true" branch_length_unit="PAM" type="species tree">
  <name>All Cyanobacteria </name>
  <description>All Cyanobacteria (max Length)  (only 1 isoform used) , Fri Dec  4 11:42:08 2009, 34 species, 13324 orthologs, 1 top groups, 223 used here, Weighted, BestSubset, DimlessQual: best: 1.9656, ave: 2.1143 +- 0.0090, var: 0.021, Z=-1.026</description>
  <date>2010-01-05T15:54:10+01:00</date>
  <clade branch_length="0.000000">
    <clade branch_length="6.040000">
      <confidence type="bootstrap">100.000000</confidence>
      <clade branch_length="2.232900">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="3.016900">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="18.197400">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="2.565500">
              <name>SYNJB</name>
              <taxonomy>
                <id>321332</id>
                <code>SYNJB</code>
                <scientific_name>Synechococcus sp. (strain JA-2-3B'a(2-13))</scientific_name>
              </taxonomy>
            </clade>
            <clade branch_length="2.755800">
              <name>SYNJA</name>
              <taxonomy>
                <id>321327</id>
                <code>SYNJA</code>
                <scientific_name>Synechococcus sp. (strain JA-3-3Ab)</scientific_name>
              </taxonomy>
            </clade>
          </clade>
          <clade branch_length="23.639300">
            <name>GLOVI</name>
            <taxonomy>
              <id>33072</id>
              <code>GLOVI</code>
              <scientific_name>Gloeobacter violaceus</scientific_name>
            </taxonomy>
          </clade>
        </clade>
        <clade branch_length="1.808900">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="1.391200">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="1.551500">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="12.038400">
                <name>CYAP4</name>
                <taxonomy>
                  <id>395961</id>
                  <code>CYAP4</code>
                  <scientific_name>Cyanothece sp. (strain PCC 7425 / ATCC 29141)</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="13.879000">
                <name>THEEB</name>
                <taxonomy>
                  <id>32046</id>
                  <code>THEEB</code>
                  <scientific_name>Thermosynechococcus elongatus (strain BP-1)</scientific_name>
                </taxonomy>
              </clade>
            </clade>
            <clade branch_length="15.136300">
              <name>ACAM1</name>
              <taxonomy>
                <id>329726</id>
                <code>ACAM1</code>
                <scientific_name>Acaryochloris marina (strain MBIC 11017)</scientific_name>
              </taxonomy>
            </clade>
          </clade>
          <clade branch_length="1.010600">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="0.819300">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="15.863300">
                <name>TRIEI</name>
                <taxonomy>
                  <id>203124</id>
                  <code>TRIEI</code>
                  <scientific_name>Trichodesmium erythraeum (strain IMS101)</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="8.969000">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="5.006000">
                  <name>NOSP7</name>
                  <taxonomy>
                    <id>63737</id>
                    <code>NOSP7</code>
                    <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="3.841700">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="0.495400">
                    <name>ANAVT</name>
                    <taxonomy>
                      <id>240292</id>
                      <code>ANAVT</code>
                      <scientific_name>Anabaena variabilis (strain ATCC 29413 / PCC 7937)</scientific_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="0.522400">
                    <name>ANASP</name>
                    <taxonomy>
                      <id>103690</id>
                      <code>ANASP</code>
                      <scientific_name>Anabaena sp. (strain PCC 7120)</scientific_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
            </clade>
            <clade branch_length="1.969500">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="15.036000">
                <name>SYNP2</name>
                <taxonomy>
                  <id>32049</id>
                  <code>SYNP2</code>
                  <scientific_name>Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="1.437000">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="0.768400">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="3.147300">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="7.933100">
                      <name>CYAP0</name>
                      <taxonomy>
                        <id>395962</id>
                        <code>CYAP0</code>
                        <scientific_name>Cyanothece sp. (strain PCC 8802)</scientific_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="8.515900">
                      <name>CYAA5</name>
                      <taxonomy>
                        <id>43989</id>
                        <code>CYAA5</code>
                        <scientific_name>Cyanothece (strain ATCC 51142)</scientific_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="12.098400">
                    <name>MICAN</name>
                    <taxonomy>
                      <id>449447</id>
                      <code>MICAN</code>
                      <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
                    </taxonomy>
                  </clade>
                </clade>
                <clade branch_length="13.114100">
                  <name>SYNY3</name>
                  <taxonomy>
                    <id>1148</id>
                    <code>SYNY3</code>
                    <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
          </clade>
        </clade>
      </clade>
      <clade branch_length="14.447200">
        <name>SYNP6</name>
        <taxonomy>
          <id>269084</id>
          <code>SYNP6</code>
          <scientific_name>Synechococcus sp. (strain PCC 6301)</scientific_name>
          <synonym>Anacystis nidulans</synonym>
        </taxonomy>
      </clade>
    </clade>
    <clade branch_length="13.222600">
      <confidence type="bootstrap">100.000000</confidence>
      <clade branch_length="1.784300">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="11.594700">
          <name>SYNR3</name>
          <taxonomy>
            <id>316278</id>
            <code>SYNR3</code>
            <scientific_name>Synechococcus sp. (strain RCC307)</scientific_name>
          </taxonomy>
        </clade>
        <clade branch_length="0.786800">
          <confidence type="bootstrap">97.000000</confidence>
          <clade branch_length="8.293800">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="0.504000">
              <name>PROM3</name>
              <taxonomy>
                <id>59922</id>
                <code>PROM3</code>
                <scientific_name>Prochlorococcus marinus (strain MIT 9303)</scientific_name>
              </taxonomy>
            </clade>
            <clade branch_length="0.550600">
              <name>PROMM</name>
              <taxonomy>
                <id>74547</id>
                <code>PROMM</code>
                <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
              </taxonomy>
            </clade>
          </clade>
          <clade branch_length="2.175300">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="2.498400">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="5.469900">
                <name>SYNS9</name>
                <taxonomy>
                  <id>316279</id>
                  <code>SYNS9</code>
                  <scientific_name>Synechococcus sp. (strain CC9902)</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="1.269800">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="3.348200">
                  <name>SYNSC</name>
                  <taxonomy>
                    <id>110662</id>
                    <code>SYNSC</code>
                    <scientific_name>Synechococcus sp. (strain CC9605)</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="3.767300">
                  <name>SYNPX</name>
                  <taxonomy>
                    <id>84588</id>
                    <code>SYNPX</code>
                    <scientific_name>Synechococcus sp. (strain WH8102)</scientific_name>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
            <clade branch_length="1.037900">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="5.414900">
                <name>SYNPW</name>
                <taxonomy>
                  <id>32051</id>
                  <code>SYNPW</code>
                  <scientific_name>Synechococcus sp. (strain WH7803)</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="6.203200">
                <name>SYNS3</name>
                <taxonomy>
                  <id>64471</id>
                  <code>SYNS3</code>
                  <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
                </taxonomy>
              </clade>
            </clade>
          </clade>
        </clade>
      </clade>
      <clade branch_length="2.724700">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="0.178000">
          <confidence type="bootstrap">54.000000</confidence>
          <clade branch_length="2.914200">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="7.268000">
              <name>PROM4</name>
              <taxonomy>
                <id>93059</id>
                <code>PROM4</code>
                <scientific_name>Prochlorococcus marinus (strain MIT 9211)</scientific_name>
              </taxonomy>
            </clade>
            <clade branch_length="7.319000">
              <name>PROMA</name>
              <taxonomy>
                <id>1219</id>
                <code>PROMA</code>
                <scientific_name>Prochlorococcus marinus</scientific_name>
              </taxonomy>
            </clade>
          </clade>
          <clade branch_length="10.310300">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="2.552300">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="0.490900">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="1.191100">
                  <name>PROM2</name>
                  <taxonomy>
                    <id>93060</id>
                    <code>PROM2</code>
                    <scientific_name>Prochlorococcus marinus (strain MIT 9215)</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="0.197600">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="0.681700">
                    <name>PROM0</name>
                    <taxonomy>
                      <id>167546</id>
                      <code>PROM0</code>
                      <scientific_name>Prochlorococcus marinus (strain MIT 9301)</scientific_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="0.769200">
                    <name>PROMS</name>
                    <taxonomy>
                      <id>146891</id>
                      <code>PROMS</code>
                      <scientific_name>Prochlorococcus marinus (strain AS9601)</scientific_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
              <clade branch_length="1.501100">
                <name>PROM9</name>
                <taxonomy>
                  <id>74546</id>
                  <code>PROM9</code>
                  <scientific_name>Prochlorococcus marinus (strain MIT 9312)</scientific_name>
                </taxonomy>
              </clade>
            </clade>
            <clade branch_length="2.273700">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="2.208500">
                <name>PROM5</name>
                <taxonomy>
                  <id>167542</id>
                  <code>PROM5</code>
                  <scientific_name>Prochlorococcus marinus (strain MIT 9515)</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="2.175900">
                <name>PROMP</name>
                <taxonomy>
                  <id>59919</id>
                  <code>PROMP</code>
                  <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
                </taxonomy>
              </clade>
            </clade>
          </clade>
        </clade>
        <clade branch_length="11.285700">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="0.318000">
            <name>PROM1</name>
            <taxonomy>
              <id>167555</id>
              <code>PROM1</code>
              <scientific_name>Prochlorococcus marinus (strain NATL1A)</scientific_name>
            </taxonomy>
          </clade>
          <clade branch_length="0.406800">
            <name>PROMT</name>
            <taxonomy>
              <id>59920</id>
              <code>PROMT</code>
              <scientific_name>Prochlorococcus marinus (strain NATL2A)</scientific_name>
            </taxonomy>
          </clade>
        </clade>
      </clade>
    </clade>
  </clade>
</phylogeny>
</phyloxml>

