Firmicutes All Firmicutes (max Length) (only 1 isoform used) , Fri Jan 8 08:21:57 2010, 155 species, 40396 orthologs, 45 top groups, 200 used here, Weighted, BestSubset, DimlessQual: best: 0.27701, ave: 0.31284 +- 0.00091, var: 0.0002179, Z=-2.427 2010-01-10T05:05:15+01:00 100.000000 COPPD 309798 COPPD Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) 98.000000 88.000000 HALOH 373903 HALOH Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) 100.000000 100.000000 ANAPD 525919 ANAPD Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) FINM2 334413 FINM2 Finegoldia magna (strain ATCC 29328) 100.000000 100.000000 CLOPH 357809 CLOPH Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) EUBE2 515620 EUBE2 Eubacterium eligens (strain ATCC 27750 / VPI C15-48) 80.000000 100.000000 ANATD 521460 ANATD Anaerocellum thermophilum (strain DSM 6725 / Z-1320) CALS8 351627 CALS8 Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) 90.000000 100.000000 100.000000 THEPX 399726 THEPX Thermoanaerobacter sp. (strain X514) THEP3 340099 THEP3 Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) THETN 119072 THETN Thermoanaerobacter tengcongensis 81.000000 99.000000 CLOD6 272563 CLOD6 Clostridium difficile (strain 630) 100.000000 ALKOO 350688 ALKOO Alkaliphilus oremlandii (strain OhILAs) ALKMQ 293826 ALKMQ Alkaliphilus metalliredigens (strain QYMF) 53.000000 100.000000 96.000000 CLOAB 1488 CLOAB Clostridium acetobutylicum 96.000000 CLONN 386415 CLONN Clostridium novyi (strain NT) 100.000000 94.000000 100.000000 100.000000 100.000000 CLOB1 441770 CLOB1 Clostridium botulinum (strain ATCC 19397 / Type A) CLOBH 441771 CLOBH Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) 98.000000 CLOBK 498213 CLOBK Clostridium botulinum (strain Okra / Type B1) CLOBL 441772 CLOBL Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) CLOBM 498214 CLOBM Clostridium botulinum (strain Loch Maree / Type A3) CLOK5 431943 CLOK5 Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) CLOTE 1513 CLOTE Clostridium tetani 100.000000 100.000000 CLOB8 290402 CLOB8 Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) 100.000000 CLOBA 508767 CLOBA Clostridium botulinum (strain Alaska E43 / type E3) CLOBB 508765 CLOBB Clostridium botulinum (strain Eklund 17B / type B) 100.000000 CLOPS 289380 CLOPS Clostridium perfringens (strain SM101) 96.000000 CLOP1 195103 CLOP1 Clostridium perfringens (strain ATCC 13124 / NCTC 8237) CLOPE 195102 CLOPE Clostridium perfringens 100.000000 CLOCE 394503 CLOCE Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) CLOTH 203119 CLOTH Clostridium thermocellum (strain ATCC 27405 / DSM 1237) 96.000000 100.000000 100.000000 DESHD 272564 DESHD Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) DESHY 138119 DESHY Desulfitobacterium hafniense (strain Y51) 88.000000 SYNWW 335541 SYNWW Syntrophomonas wolfei subsp. wolfei (strain Goettingen) 100.000000 CARHZ 246194 CARHZ Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) 98.000000 65.000000 100.000000 DESRM 349161 DESRM Desulfotomaculum reducens (strain MI-1) 94.000000 PELTS 370438 PELTS Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) DESAP 477974 DESAP Desulforudis audaxviator (strain MP104C) MOOTA 264732 MOOTA Moorella thermoacetica (strain ATCC 39073) HELMI 498761 HELMI Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) NATTJ 457570 NATTJ Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) 100.000000 98.000000 PAESJ 324057 PAESJ Paenibacillus sp. (strain JDR-2) BREBN 358681 BREBN Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) 98.000000 100.000000 100.000000 100.000000 OENOB 203123 OENOB Oenococcus oeni (strain BAA-331 / PSU-1) 100.000000 LEUMM 203120 LEUMM Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) LEUCK 349519 LEUCK Leuconostoc citreum (strain KM20) 79.000000 100.000000 100.000000 LACDB 321956 LACDB Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) LACDA 390333 LACDA Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) 100.000000 100.000000 LACAC 1579 LACAC Lactobacillus acidophilus LACH4 405566 LACH4 Lactobacillus helveticus (strain DPC 4571) 100.000000 LACGA 324831 LACGA Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) LACJO 33959 LACJO Lactobacillus johnsonii 100.000000 100.000000 LACSS 314315 LACSS Lactobacillus sakei subsp. sakei (strain 23K) 100.000000 LACCB 543734 LACCB Lactobacillus casei (strain BL23) LACC3 321967 LACC3 Lactobacillus casei (strain ATCC 334) 99.000000 LACS1 362948 LACS1 Lactobacillus salivarius subsp. salivarius (strain UCC118) 100.000000 PEDPA 278197 PEDPA Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) 90.000000 100.000000 LACBA 387344 LACBA Lactobacillus brevis (strain ATCC 367 / JCM 1170) 100.000000 LACPJ 644042 LACPJ Lactobacillus plantarum (strain JDM1) LACPL 1590 LACPL Lactobacillus plantarum 100.000000 LACF3 334390 LACF3 Lactobacillus fermentum (strain IFO 3956 / LMG 18251) 100.000000 LACRD 557436 LACRD Lactobacillus reuteri (strain DSM 20016) LACRJ 557433 LACRJ Lactobacillus reuteri (strain JCM 1112) 100.000000 100.000000 100.000000 100.000000 LACLM 416870 LACLM Lactococcus lactis subsp. cremoris (strain MG1363) LACLS 272622 LACLS Lactococcus lactis subsp. cremoris (strain SK11) LACLA 1360 LACLA Lactococcus lactis subsp. lactis 100.000000 100.000000 STRMU 1309 STRMU Streptococcus mutans 57.000000 100.000000 STRTD 322159 STRTD Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) 100.000000 STRT2 264199 STRT2 Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) STRT1 299768 STRT1 Streptococcus thermophilus (strain CNRZ 1066) 100.000000 100.000000 66.000000 STRA3 216495 STRA3 Streptococcus agalactiae (serotype III) STRA5 216466 STRA5 Streptococcus agalactiae (serotype V) STRA1 355315 STRA1 Streptococcus agalactiae serotype Ia 100.000000 STRU0 218495 STRU0 Streptococcus uberis (strain ATCC BAA-854 / 0140J) 100.000000 100.000000 STRS7 40041 STRS7 Streptococcus equi subsp. zooepidemicus (strain H70) 49.000000 STREM 552526 STREM Streptococcus equi subsp. zooepidemicus (strain MGCS10565) STRE4 553482 STRE4 Streptococcus equi subsp. equi (strain 4047) 100.000000 STRDG 486410 STRDG Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) 100.000000 53.000000 STRPM 319700 STRPM Streptococcus pyogenes serotype M28 16.000000 20.000000 30.000000 STRP1 301447 STRP1 Streptococcus pyogenes serotype M1 STRPZ 471876 STRPZ Streptococcus pyogenes serotype M49 (strain NZ131) 48.000000 STRPD 370552 STRPD Streptococcus pyogenes serotype M2 (strain MGAS10270) 84.000000 STRPF 370554 STRPF Streptococcus pyogenes serotype M4 (strain MGAS10750) 100.000000 STRP8 301451 STRP8 Streptococcus pyogenes (serotype M18) 81.000000 STRPG 160491 STRPG Streptococcus pyogenes serotype M5 (strain Manfredo) STRP6 301450 STRP6 Streptococcus pyogenes (serotype M6) STRP3 301448 STRP3 Streptococcus pyogenes (serotype M3) 70.000000 STRPB 370553 STRPB Streptococcus pyogenes serotype M12 (strain MGAS2096) STRPC 370551 STRPC Streptococcus pyogenes serotype M12 (strain MGAS9429) 100.000000 100.000000 STRS2 391296 STRS2 Streptococcus suis (strain 98HAH33) 81.000000 34.000000 STRSY 391295 STRSY Streptococcus suis (strain 05ZYH33) STRSX 568813 STRSX Streptococcus suis (strain SC84) STRSE 218494 STRSE Streptococcus suis (strain P1/7) 100.000000 100.000000 STRSV 388919 STRSV Streptococcus sanguinis (strain SK36) STRGC 29390 STRGC Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) 100.000000 STRP4 512566 STRP4 Streptococcus pneumoniae serotype 19F (strain G54) 49.000000 STRPI 487214 STRPI Streptococcus pneumoniae (strain Hungary19A-6) 62.000000 24.000000 STRPS 516950 STRPS Streptococcus pneumoniae (strain CGSP14) 45.000000 STRZP 488223 STRZP Streptococcus pneumoniae (strain P1031) 100.000000 STRPJ 561276 STRPJ Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) STRZJ 488222 STRZJ Streptococcus pneumoniae (strain JJA) 58.000000 100.000000 STRP2 373153 STRP2 Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) STRR6 171101 STRR6 Streptococcus pneumoniae (strain ATCC BAA-255 / R6) STRPN 1313 STRPN Streptococcus pneumoniae ENTFA 226185 ENTFA Enterococcus faecalis 98.000000 100.000000 MACCJ 458233 MACCJ Macrococcus caseolyticus (strain JCSC5402) 100.000000 STACT 396513 STACT Staphylococcus carnosus (strain TM300) 100.000000 STAS1 342451 STAS1 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) 100.000000 85.000000 STAHJ 279808 STAHJ Staphylococcus haemolyticus (strain JCSC1435) 100.000000 STAES 176280 STAES Staphylococcus epidermidis (strain ATCC 12228) STAEQ 176279 STAEQ Staphylococcus epidermidis (strain ATCC 35984 / RP62A) 100.000000 38.000000 86.000000 89.000000 STAA8 93061 STAA8 Staphylococcus aureus (strain NCTC 8325) 40.000000 92.000000 STAAT 451516 STAAT Staphylococcus aureus (strain USA300 / TCH1516) STAA3 367830 STAA3 Staphylococcus aureus (strain USA300) 63.000000 STAAE 426430 STAAE Staphylococcus aureus (strain Newman) STAAC 93062 STAAC Staphylococcus aureus (strain COL) 100.000000 STAAS 282459 STAAS Staphylococcus aureus (strain MSSA476) STAAW 196620 STAAW Staphylococcus aureus (strain MW2) 99.000000 92.000000 STAA9 359786 STAA9 Staphylococcus aureus (strain JH9) STAA2 359787 STAA2 Staphylococcus aureus (strain JH1) 83.000000 STAAN 158879 STAAN Staphylococcus aureus (strain N315) 97.000000 STAA1 418127 STAA1 Staphylococcus aureus (strain Mu3 / ATCC 700698) STAAM 158878 STAAM Staphylococcus aureus (strain Mu50 / ATCC 700699) 99.000000 STAAR 282458 STAAR Staphylococcus aureus (strain MRSA252) STAAB 273036 STAAB Staphylococcus aureus (strain bovine RF122) 100.000000 100.000000 EXISA 360911 EXISA Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) EXIS2 262543 EXIS2 Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) 86.000000 100.000000 100.000000 91.000000 100.000000 LISMC 634178 LISMC Listeria monocytogenes serotype 4b (strain Clip81459) LISMF 265669 LISMF Listeria monocytogenes (serotype 4b / strain F2365) LISMO 1639 LISMO Listeria monocytogenes LISMH 552536 LISMH Listeria monocytogenes serotype 4a (strain HCC23) 73.000000 LISIN 1642 LISIN Listeria innocua LISW6 386043 LISW6 Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) 100.000000 LYSSC 444177 LYSSC Lysinibacillus sphaericus (strain C3-41) 82.000000 OCEIH 182710 OCEIH Oceanobacillus iheyensis 100.000000 100.000000 BACSK 66692 BACSK Bacillus clausii (strain KSM-K16) BACHD 86665 BACHD Bacillus halodurans 100.000000 100.000000 BACCN 315749 BACCN Bacillus cereus subsp. cytotoxis (strain NVH 391-98) 100.000000 BACWK 315730 BACWK Bacillus weihenstephanensis (strain KBAB4) 100.000000 100.000000 BACC2 405531 BACC2 Bacillus cereus (strain G9842) 96.000000 BACC4 405532 BACC4 Bacillus cereus (strain B4264) BACCR 226900 BACCR Bacillus cereus (strain ATCC 14579 / DSM 31) 100.000000 100.000000 BACC7 405534 BACC7 Bacillus cereus (strain AH187) BACC1 222523 BACC1 Bacillus cereus (strain ATCC 10987) 100.000000 BACCZ 288681 BACCZ Bacillus cereus (strain ZK) 55.000000 100.000000 BACAH 412694 BACAH Bacillus thuringiensis (strain Al Hakam) BACHK 180856 BACHK Bacillus thuringiensis (subsp. konkukian) BACAN 1392 BACAN Bacillus anthracis 98.000000 100.000000 GEOSW 471223 GEOSW Geobacillus sp. (strain WCH70) 100.000000 GEOTN 420246 GEOTN Geobacillus thermodenitrificans (strain NG80-2) GEOKA 1462 GEOKA Geobacillus kaustophilus 100.000000 BACP2 315750 BACP2 Bacillus pumilus (strain SAFR-032) 100.000000 BACLD 279010 BACLD Bacillus licheniformis (strain DSM 13 / ATCC 14580) 100.000000 BACA2 326423 BACA2 Bacillus amyloliquefaciens (strain FZB42) BACSU 1423 BACSU Bacillus subtilis