Gammaproteobacteria All Gammaproteobacteria (max Length) (only 1 isoform used) , Thu Jan 14 11:45:25 2010, 206 species, 53534 orthologs, 47 top groups, 262 used here, Arithmetic, BestSubset, DimlessQual: best: 0.19728, ave: 0.21386 +- 0.00077, var: 0.0001547, Z=-1.334 2010-01-20T06:05:20+01:00 100.000000 100.000000 LEGPC 400673 LEGPC Legionella pneumophila (strain Corby) 63.000000 85.000000 LEGPL 297245 LEGPL Legionella pneumophila (strain Lens) LEGPH 272624 LEGPH Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152) LEGPA 297246 LEGPA Legionella pneumophila (strain Paris) 58.000000 59.000000 100.000000 100.000000 FRATN 401614 FRATN Francisella tularensis subsp. novicida (strain U112) 42.000000 99.000000 FRATH 376619 FRATH Francisella tularensis subsp. holarctica (strain LVS) 69.000000 FRATF 458234 FRATF Francisella tularensis subsp. holarctica (strain FTA) FRATO 393011 FRATO Francisella tularensis subsp. holarctica (strain OSU18) 33.000000 FRATM 441952 FRATM Francisella tularensis subsp. mediasiatica (strain FSC147) 40.000000 FRATW 418136 FRATW Francisella tularensis subsp. tularensis (strain WY96-3418) 92.000000 FRAT1 393115 FRAT1 Mycobacteriophage FRAT1 FRATT 119856 FRATT Francisella tularensis (subsp. tularensis) FRAP2 484022 FRAP2 Francisella philomiragia subsp. philomiragia (strain ATCC 25017) 47.000000 65.000000 100.000000 IDILO 135577 IDILO Idiomarina loihiensis 100.000000 99.000000 100.000000 PSEA6 342610 PSEA6 Pseudoalteromonas atlantica (strain T6c / BAA-1087) ALTMD 314275 ALTMD Alteromonas macleodii (strain DSM 17117 / Deep ecotype) 100.000000 PSEHT 326442 PSEHT Pseudoalteromonas haloplanktis (strain TAC 125) COLP3 167879 COLP3 Colwellia psychrerythraea (strain 34H / ATCC BAA-681) Vibrio psychroerythus 94.000000 77.000000 100.000000 100.000000 AERS4 382245 AERS4 Aeromonas salmonicida (strain A449) AERHH 380703 AERHH Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) 100.000000 100.000000 100.000000 100.000000 100.000000 100.000000 ACTPJ 434271 ACTPJ Actinobacillus pleuropneumoniae serotype 3 (strain JL03) 60.000000 ACTP2 416269 ACTP2 Actinobacillus pleuropneumoniae serotype 5b (strain L20) ACTP7 537457 ACTP7 Actinobacillus pleuropneumoniae serotype 7 (strain AP76) HAEDU 730 HAEDU Haemophilus ducreyi HAEPS 557723 HAEPS Haemophilus parasuis serovar 5 (strain SH0165) 100.000000 100.000000 MANSM 221988 MANSM Mannheimia succiniciproducens (strain MBEL55E) ACTSZ 339671 ACTSZ Actinobacillus succinogenes (strain ATCC 55618 / 130Z) 92.000000 49.000000 100.000000 HAES1 205914 HAES1 Haemophilus somnus (strain 129PT) HAES2 228400 HAES2 Haemophilus somnus (strain 2336) PASMU 272843 PASMU Pasteurella multocida 100.000000 58.000000 HAEIE 374930 HAEIE Haemophilus influenzae (strain PittEE) 72.000000 HAEIN 71421 HAEIN Haemophilus influenzae HAEI8 281310 HAEI8 Haemophilus influenzae (strain 86-028NP) HAEIG 374931 HAEIG Haemophilus influenzae (strain PittGG) 100.000000 100.000000 100.000000 BLOFL 203907 BLOFL Candidatus Blochmannia floridanus BLOPB 291272 BLOPB Blochmannia pennsylvanicus (strain BPEN) 100.000000 WIGBR 36870 WIGBR Wigglesworthia glossinidia brevipalpis 100.000000 100.000000 100.000000 BUCAI 118099 BUCAI Buchnera aphidicola (subsp. Acyrthosiphon pisum) Acyrthosiphon pisum symbiotic bacterium 68.000000 BUCA5 563178 BUCA5 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) BUCAT 561501 BUCAT Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) BUCAP 98794 BUCAP Buchnera aphidicola (subsp. Schizaphis graminum) 76.000000 BUCBP 135842 BUCBP Buchnera aphidicola (subsp. Baizongia pistaciae) BUCCC 372461 BUCCC Buchnera aphidicola subsp. Cinara cedri 100.000000 BAUCH 374463 BAUCH Baumannia cicadellinicola (subsp. Homalodisca coagulata) 98.000000 HAMD5 572265 HAMD5 Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) 100.000000 100.000000 100.000000 PHOAA 291112 PHOAA Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) PHOLL 141679 PHOLL Photorhabdus luminescens (subsp. laumondii) 100.000000 SODGM 343509 SODGM Sodalis glossinidius (strain morsitans) 88.000000 100.000000 100.000000 SERP5 399741 SERP5 Serratia proteamaculans (strain 568) 100.000000 YERE8 393305 YERE8 Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) 100.000000 YERPB 502801 YERPB Yersinia pseudotuberculosis serotype IB (strain PB1/+) 58.000000 YERPS 273123 YERPS Yersinia pseudotuberculosis 60.000000 YERP3 349747 YERP3 Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758) 84.000000 YERPY 502800 YERPY Yersinia pseudotuberculosis serotype O:3 (strain YPIII) 100.000000 YERPP 386656 YERPP Yersinia pestis (strain Pestoides F) 42.000000 24.000000 YERPA 360102 YERPA Yersinia pestis (biovar Antiqua strain Antiqua) 25.000000 YERPG 349746 YERPG Yersinia pestis bv. Antiqua (strain Angola) YERPN 377628 YERPN Yersinia pestis (biovar Antiqua strain Nepal516) YERPE 214092 YERPE Yersinia pestis ERWCT 29471 ERWCT Erwinia carotovora (subsp. atroseptica) Pectobacterium atrosepticum 100.000000 ERWT9 338565 ERWT9 Erwinia tasmaniensis (strain DSM 17950 / ET1/99) 100.000000 ENTS8 290339 ENTS8 Enterobacter sakazakii (strain ATCC BAA-894) 100.000000 100.000000 KLEP7 272620 KLEP7 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) KLEP3 507522 KLEP3 Klebsiella pneumoniae (strain 342) 100.000000 ENT38 399742 ENT38 Enterobacter sp. (strain 638) 100.000000 100.000000 CITK8 290338 CITK8 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) 100.000000 SALAR 41514 SALAR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) 100.000000 SALTI 220341 SALTI Salmonella typhi 63.000000 100.000000 SALPK 554290 SALPK Salmonella paratyphi A (strain AKU_12601) SALPA 54388 SALPA Salmonella paratyphi-a 99.000000 65.000000 SALSV 439843 SALSV Salmonella schwarzengrund (strain CVM19633) SALA4 454166 SALA4 Salmonella agona (strain SL483) 72.000000 100.000000 SALPC 476213 SALPC Salmonella paratyphi C (strain RKS4594) SALCH 28901 SALCH Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 Salmonella enterica 44.000000 64.000000 SALPB 272994 SALPB Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) 100.000000 SALDC 439851 SALDC Salmonella dublin (strain CT_02021853) 100.000000 SALG2 550538 SALG2 Salmonella gallinarum (strain 287/91 / NCTC 13346) SALEP 550537 SALEP Salmonella enteritidis PT4 (strain P125109) 61.000000 SALNS 423368 SALNS Salmonella newport (strain SL254) 99.000000 SALHS 454169 SALHS Salmonella heidelberg (strain SL476) SALTY 90371 SALTY Salmonella typhimurium 100.000000 97.000000 ECOLU 585055 ECOLU Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) 100.000000 73.000000 SHIDS 300267 SHIDS Shigella dysenteriae serotype 1 (strain Sd197) 100.000000 ECO5E 444450 ECO5E Escherichia coli O157:H7 (strain EC4115 / EHEC) ECO57 83334 ECO57 Escherichia coli O157:H7 100.000000 94.000000 99.000000 ECO24 331111 ECO24 Escherichia coli O139:H28 (strain E24377A / ETEC) 78.000000 ECO8A 585055 ECO8A Escherichia coli O8 (strain IAI1) 63.000000 ECOSE 409438 ECOSE Escherichia coli (strain SE11) ECO55 585055 ECO55 Escherichia coli (strain 55989 / EAEC) 74.000000 99.000000 SHISS 300269 SHISS Shigella sonnei (strain Ss046) 100.000000 SHIB3 344609 SHIB3 Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) SHIBS 300268 SHIBS Shigella boydii serotype 4 (strain Sb227) 100.000000 SHIF8 373384 SHIF8 Shigella flexneri serotype 5b (strain 8401) SHIFL 623 SHIFL Shigella flexneri 100.000000 70.000000 ECOLC 481805 ECOLC Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) 82.000000 ECOBB 511693 ECOBB Escherichia coli (strain B / BL21) 100.000000 ECODH 316385 ECODH Escherichia coli (strain DH10B) ECOLI 511145 ECOLI Escherichia coli (strain K12) ECOHS 331112 ECOHS Escherichia coli O9:H4 (strain HS) 79.000000 100.000000 ECO27 574521 ECO27 Escherichia coli O127:H6 (strain E2348/69 / EPEC) 100.000000 ECOL5 362663 ECOL5 Escherichia coli O6:K15:H31 (strain 536) 81.000000 ECOL6 217992 ECOL6 Escherichia coli O6 100.000000 ECO81 585055 ECO81 Escherichia coli O81 (strain ED1a) 100.000000 ECO45 585055 ECO45 Escherichia coli O45:K1 (strain S88 / ExPEC) 83.000000 ECOK1 405955 ECOK1 Escherichia coli O1:K1 / APEC ECOUT 364106 ECOUT Escherichia coli (strain UTI89 / UPEC) 100.000000 ECO7I 585055 ECO7I Escherichia coli O7:K1 (strain IAI39 / ExPEC) ECOSM 439855 ECOSM Escherichia coli (strain SMS-3-5 / SECEC) PROMH 529507 PROMH Proteus mirabilis (strain HI4320) 100.000000 100.000000 100.000000 ALISL 316275 ALISL Aliivibrio salmonicida (strain LFI1238) 100.000000 VIBFM 388396 VIBFM Vibrio fischeri (strain MJ11) VIBF1 312309 VIBF1 Vibrio fischeri (strain ATCC 700601 / ES114) 100.000000 100.000000 VIBC3 345073 VIBC3 Vibrio cholerae (strain ATCC 39541 / O395) 100.000000 VIBCM 579112 VIBCM Vibrio cholerae serotype O1 (strain M66-2) VIBCH 666 VIBCH Vibrio cholerae 100.000000 VIBSL 575788 VIBSL Vibrio splendidus (strain LGP32) 100.000000 100.000000 VIBHB 338187 VIBHB Vibrio harveyi (strain ATCC BAA-1116 / BB120) VIBPA 670 VIBPA Vibrio parahaemolyticus 100.000000 VIBVU 672 VIBVU Vibrio vulnificus VIBVY 196600 VIBVY Vibrio vulnificus (strain YJ016) PHOPR 74109 PHOPR Photobacterium profundum Photobacterium sp. (strain SS9) PSYIN 357804 PSYIN Psychromonas ingrahamii (strain 37) 100.000000 SHEAM 326297 SHEAM Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) 100.000000 100.000000 SHELP 323850 SHELP Shewanella loihica (strain BAA-1088 / PV-4) 100.000000 100.000000 SHESH 425104 SHESH Shewanella sediminis (strain HAW-EB3) SHEWM 392500 SHEWM Shewanella woodyi (strain ATCC 51908 / MS32) 100.000000 100.000000 SHEPA 398579 SHEPA Shewanella pealeana (strain ANG-SQ1 / ATCC 700345) SHEHH 458817 SHEHH Shewanella halifaxensis (strain HAW-EB4) SHEPW 225849 SHEPW Shewanella piezotolerans (strain WP3 / JCM 13877) 100.000000 100.000000 100.000000 100.000000 SHESA 94122 SHESA Shewanella sp. (strain ANA-3) 100.000000 SHESM 60480 SHESM Shewanella sp. (strain MR-4) SHESR 60481 SHESR Shewanella sp. (strain MR-7) SHEON 70863 SHEON Shewanella oneidensis 100.000000 100.000000 SHEPC 319224 SHEPC Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) SHESW 351745 SHESW Shewanella sp. (strain W3-18-1) 100.000000 SHEB5 325240 SHEB5 Shewanella baltica (strain OS155 / ATCC BAA-1091) 64.000000 SHEB2 407976 SHEB2 Shewanella baltica (strain OS223) 60.000000 SHEB9 399599 SHEB9 Shewanella baltica (strain OS195) SHEB8 402882 SHEB8 Shewanella baltica (strain OS185) 100.000000 SHEDO 318161 SHEDO Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) SHEFN 318167 SHEFN Shewanella frigidimarina (strain NCIMB 400) 54.000000 66.000000 94.000000 61.000000 100.000000 ACIF2 243159 ACIF2 Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) ACIF5 380394 ACIF5 Acidithiobacillus ferrooxidans (strain ATCC 53993) 100.000000 100.000000 100.000000 STRM5 391008 STRM5 Stenotrophomonas maltophilia (strain R551-3) STRMK 522373 STRMK Stenotrophomonas maltophilia (strain K279a) 100.000000 100.000000 100.000000 XANC5 316273 XANC5 Xanthomonas campestris pv. vesicatoria (strain 85-10) XANAC 92829 XANAC Xanthomonas axonopodis (pv. citri) 100.000000 XANOR 64187 XANOR Xanthomonas oryzae (pv. oryzae) 81.000000 XANOM 342109 XANOM Xanthomonas oryzae pv. oryzae (strain MAFF 311018) XANOP 360094 XANOP Xanthomonas oryzae pv. oryzae (strain PXO99A) 100.000000 XANCB 509169 XANCB Xanthomonas campestris pv. campestris (strain B100) 95.000000 XANC8 314565 XANC8 Xanthomonas campestris pv. campestris (strain 8004) XANCP 190485 XANCP Xanthomonas campestris pv. campestris 100.000000 XYLFA 2371 XYLFA Xylella fastidiosa 100.000000 XYLFM 405440 XYLFM Xylella fastidiosa (strain M12) 100.000000 XYLF2 405441 XYLF2 Xylella fastidiosa (strain M23) XYLFT 183190 XYLFT Xylella fastidiosa (strain Temecula1 / ATCC 700964) 71.000000 94.000000 100.000000 HALHL 349124 HALHL Halorhodospira halophila (strain DSM 244 / SL1) ALHEH 187272 ALHEH Alkalilimnicola ehrlichei (strain MLHE-1) THISH 396588 THISH Thioalkalivibrio sp. (strain HL-EbGR7) 52.000000 METCA 414 METCA Methylococcus capsulatus NITOC 323261 NITOC Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) DICNV 246195 DICNV Dichelobacter nodosus (strain VCS1703A) 90.000000 100.000000 100.000000 PSYWF 349106 PSYWF Psychrobacter sp. (strain PRwf-1) 100.000000 PSYA2 259536 PSYA2 Psychrobacter arcticus (strain DSM 17307 / 273-4) PSYCK 335284 PSYCK Psychrobacter cryohalolentis (strain K5) 100.000000 ACIAD 62977 ACIAD Acinetobacter sp. (strain ADP1) 100.000000 96.000000 94.000000 ACIB5 480119 ACIB5 Acinetobacter baumannii (strain AB0057) 97.000000 ACIB3 557600 ACIB3 Acinetobacter baumannii (strain AB307-0294) ACIBY 509173 ACIBY Acinetobacter baumannii (strain AYE) 89.000000 ACIBC 405416 ACIBC Acinetobacter baumannii (strain ACICU) ACIBS 509170 ACIBS Acinetobacter baumannii (strain SDF) ACIBT 400667 ACIBT Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) 90.000000 MARMS 400668 MARMS Marinomonas sp. (strain MWYL1) 61.000000 90.000000 91.000000 CELJU 498211 CELJU Cellvibrio japonicus (strain Ueda107) 100.000000 TERTT 377629 TERTT Teredinibacter turnerae (strain ATCC 39867 / T7901) SACD2 203122 SACD2 Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) 100.000000 100.000000 HAHCH 349521 HAHCH Hahella chejuensis (strain KCTC 2396) MARAV 351348 MARAV Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) 74.000000 CHRSD 290398 CHRSD Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) 100.000000 PSEU5 379731 PSEU5 Pseudomonas stutzeri (strain A1501) 75.000000 60.000000 PSEMY 399739 PSEMY Pseudomonas mendocina (strain ymp) 100.000000 PSEA7 381754 PSEA7 Pseudomonas aeruginosa (strain PA7) 100.000000 PSEA8 557722 PSEA8 Pseudomonas aeruginosa (strain LESB58) 81.000000 PSEAB 208963 PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14) PSEAE 208964 PSEAE Pseudomonas aeruginosa 100.000000 100.000000 PSEE4 384676 PSEE4 Pseudomonas entomophila (strain L48) 100.000000 100.000000 PSEPG 76869 PSEPG Pseudomonas putida (strain GB-1) 100.000000 PSEP1 351746 PSEP1 Pseudomonas putida (strain F1 / ATCC 700007) PSEPK 160488 PSEPK Pseudomonas putida (strain KT2440) PSEPW 390235 PSEPW Pseudomonas putida (strain W619) 100.000000 100.000000 PSEFS 216595 PSEFS Pseudomonas fluorescens (strain SBW25) 98.000000 PSEPF 205922 PSEPF Pseudomonas fluorescens (strain PfO-1) PSEF5 220664 PSEF5 Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) 100.000000 PSESM 323 PSESM Pseudomonas syringae (pv. tomato) 100.000000 PSEU2 205918 PSEU2 Pseudomonas syringae pv. syringae (strain B728a) PSE14 264730 PSE14 Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) ALCBS 393595 ALCBS Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) 80.000000 THICR 317025 THICR Thiomicrospira crunogena (strain XCL-2) 100.000000 RUTMC 413404 RUTMC Ruthia magnifica subsp. Calyptogena magnifica VESOH 412965 VESOH Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) 100.000000 59.000000 COXB2 434923 COXB2 Coxiella burnetii (strain CbuG_Q212) 100.000000 COXBR 360115 COXBR Coxiella burnetii (strain RSA 331 / Henzerling II) COXBU 777 COXBU Coxiella burnetii COXBN 434922 COXBN Coxiella burnetii (strain Dugway 5J108-111)