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<phylogeny rooted="true" rerootable="true" branch_length_unit="PAM" type="species tree">
  <name>Eukaryota excluding Metazoa </name>
  <description>Eukaryota excluding Metazoa (max Length)  (only 1 isoform used) , Fri Dec  4 14:59:16 2009, 34 species, 58671 orthologs, 14 top groups, 309 used here, Arithmetic, BestSubset, DimlessQual: best: 0.45587, ave: 0.7163 +- 0.0033, var: 0.002875, Z=-4.857</description>
  <date>2010-01-05T15:54:14+01:00</date>
  <clade branch_length="0.000000">
    <clade branch_length="10.333400">
      <confidence type="bootstrap">100.000000</confidence>
      <clade branch_length="6.233100">
        <confidence type="bootstrap">100.000000</confidence>
        <clade branch_length="5.755000">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="19.231800">
            <name>USTMA</name>
            <taxonomy>
              <id>5270</id>
              <code>USTMA</code>
              <scientific_name>Ustilago maydis</scientific_name>
            </taxonomy>
          </clade>
          <clade branch_length="1.669700">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="19.525200">
              <name>CRYNE</name>
              <taxonomy>
                <id>5207</id>
                <code>CRYNE</code>
                <scientific_name>Cryptococcus neoformans</scientific_name>
                <synonym>Filobasidiella neoformans</synonym>
              </taxonomy>
            </clade>
            <clade branch_length="19.087200">
              <name>LACBI</name>
              <taxonomy>
                <id>29883</id>
                <code>LACBI</code>
                <scientific_name>Laccaria bicolor</scientific_name>
              </taxonomy>
            </clade>
          </clade>
        </clade>
        <clade branch_length="2.642100">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="24.403300">
            <name>SCHPO</name>
            <taxonomy>
              <id>4896</id>
              <code>SCHPO</code>
              <scientific_name>Schizosaccharomyces pombe</scientific_name>
              <common_name>Fission yeast</common_name>
            </taxonomy>
          </clade>
          <clade branch_length="1.148100">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="4.405600">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="19.944200">
                <name>YARLI</name>
                <taxonomy>
                  <id>4952</id>
                  <code>YARLI</code>
                  <scientific_name>Yarrowia lipolytica</scientific_name>
                  <synonym>Candida lipolytica</synonym>
                </taxonomy>
              </clade>
              <clade branch_length="4.676300">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="7.443100">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="2.450900">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="9.825000">
                      <name>CANGA</name>
                      <taxonomy>
                        <id>5478</id>
                        <code>CANGA</code>
                        <scientific_name>Candida glabrata</scientific_name>
                        <common_name>Yeast</common_name>
                        <synonym>Torulopsis glabrata</synonym>
                      </taxonomy>
                    </clade>
                    <clade branch_length="9.214700">
                      <name>YEAST</name>
                      <taxonomy>
                        <id>4932</id>
                        <code>YEAST</code>
                        <scientific_name>Saccharomyces cerevisiae</scientific_name>
                        <common_name>Baker's yeast</common_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="0.851900">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="10.818900">
                      <name>KLULA</name>
                      <taxonomy>
                        <id>28985</id>
                        <code>KLULA</code>
                        <scientific_name>Kluyveromyces lactis</scientific_name>
                        <common_name>Yeast</common_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="11.600700">
                      <name>ASHGO</name>
                      <taxonomy>
                        <id>33169</id>
                        <code>ASHGO</code>
                        <scientific_name>Ashbya gossypii</scientific_name>
                        <common_name>Yeast</common_name>
                        <synonym>Eremothecium gossypii</synonym>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
                <clade branch_length="7.336100">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="1.994500">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="9.210300">
                      <name>LODEL</name>
                      <taxonomy>
                        <id>36914</id>
                        <code>LODEL</code>
                        <scientific_name>Lodderomyces elongisporus</scientific_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="7.505600">
                      <name>CANAL</name>
                      <taxonomy>
                        <id>5476</id>
                        <code>CANAL</code>
                        <scientific_name>Candida albicans</scientific_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="1.141400">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="7.712400">
                      <name>PICST</name>
                      <taxonomy>
                        <id>4924</id>
                        <code>PICST</code>
                        <scientific_name>Pichia stipitis</scientific_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="8.889300">
                      <name>DEBHA</name>
                      <taxonomy>
                        <id>4959</id>
                        <code>DEBHA</code>
                        <scientific_name>Debaryomyces hansenii</scientific_name>
                        <synonym>Torulaspora hansenii</synonym>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
              </clade>
            </clade>
            <clade branch_length="9.167200">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="1.749800">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="13.551300">
                  <name>MAGGR</name>
                  <taxonomy>
                    <id>148305</id>
                    <code>MAGGR</code>
                    <scientific_name>Magnaporthe grisea</scientific_name>
                    <common_name>rice blast fungus</common_name>
                  </taxonomy>
                </clade>
                <clade branch_length="11.671300">
                  <name>BOTFB</name>
                  <taxonomy>
                    <id>332648</id>
                    <code>BOTFB</code>
                    <scientific_name>Botrytis cinerea</scientific_name>
                    <synonym>Botryotinia fuckeliana</synonym>
                  </taxonomy>
                </clade>
              </clade>
              <clade branch_length="0.212300">
                <confidence type="bootstrap">70.000000</confidence>
                <clade branch_length="14.700900">
                  <name>ASPFU</name>
                  <taxonomy>
                    <id>5085</id>
                    <code>ASPFU</code>
                    <scientific_name>Aspergillus fumigatus</scientific_name>
                    <synonym>Sartorya fumigata</synonym>
                  </taxonomy>
                </clade>
                <clade branch_length="15.284800">
                  <name>PHANO</name>
                  <taxonomy>
                    <id>13684</id>
                    <code>PHANO</code>
                    <scientific_name>Phaeosphaeria nodorum</scientific_name>
                    <synonym>Stagonospora nodorum</synonym>
                  </taxonomy>
                </clade>
              </clade>
            </clade>
          </clade>
        </clade>
      </clade>
      <clade branch_length="0.893200">
        <confidence type="bootstrap">93.000000</confidence>
        <clade branch_length="1.261000">
          <confidence type="bootstrap">98.000000</confidence>
          <clade branch_length="4.046700">
            <confidence type="bootstrap">100.000000</confidence>
            <clade branch_length="28.615200">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="17.885100">
                <name>TRYBB</name>
                <taxonomy>
                  <id>5702</id>
                  <code>TRYBB</code>
                  <scientific_name>Trypanosoma brucei</scientific_name>
                </taxonomy>
              </clade>
              <clade branch_length="14.163000">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="4.329000">
                  <name>LEIBR</name>
                  <taxonomy>
                    <id>5660</id>
                    <code>LEIBR</code>
                    <scientific_name>Leishmania braziliensis</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="3.049800">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="1.175800">
                    <name>LEIIN</name>
                    <taxonomy>
                      <id>5671</id>
                      <code>LEIIN</code>
                      <scientific_name>Leishmania infantum</scientific_name>
                    </taxonomy>
                  </clade>
                  <clade branch_length="1.342100">
                    <name>LEIMA</name>
                    <taxonomy>
                      <id>5664</id>
                      <code>LEIMA</code>
                      <scientific_name>Leishmania major</scientific_name>
                    </taxonomy>
                  </clade>
                </clade>
              </clade>
            </clade>
            <clade branch_length="54.829300">
              <name>GIALA</name>
              <taxonomy>
                <id>184922</id>
                <code>GIALA</code>
                <scientific_name>Giardia lamblia</scientific_name>
                <synonym>Giardia intestinalis</synonym>
              </taxonomy>
            </clade>
          </clade>
          <clade branch_length="0.812400">
            <confidence type="bootstrap">99.000000</confidence>
            <clade branch_length="8.605600">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="31.026600">
                <name>PLAF7</name>
                <taxonomy>
                  <id>36329</id>
                  <code>PLAF7</code>
                  <scientific_name>Plasmodium falciparum</scientific_name>
                  <common_name>Malaria parasite</common_name>
                </taxonomy>
              </clade>
              <clade branch_length="29.166900">
                <name>CRYPV</name>
                <taxonomy>
                  <id>5807</id>
                  <code>CRYPV</code>
                  <scientific_name>Cryptosporidium parvum</scientific_name>
                </taxonomy>
              </clade>
            </clade>
            <clade branch_length="0.900400">
              <confidence type="bootstrap">100.000000</confidence>
              <clade branch_length="5.714900">
                <confidence type="bootstrap">100.000000</confidence>
                <clade branch_length="27.127400">
                  <name>OSTLU</name>
                  <taxonomy>
                    <id>436017</id>
                    <code>OSTLU</code>
                    <scientific_name>Ostreococcus lucimarinus</scientific_name>
                  </taxonomy>
                </clade>
                <clade branch_length="14.986100">
                  <confidence type="bootstrap">100.000000</confidence>
                  <clade branch_length="7.282300">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="3.861600">
                      <name>SORBI</name>
                      <taxonomy>
                        <id>4558</id>
                        <code>SORBI</code>
                        <scientific_name>Sorghum bicolor</scientific_name>
                        <common_name>Sorghum</common_name>
                      </taxonomy>
                    </clade>
                    <clade branch_length="3.695200">
                      <name>ORYSA</name>
                      <taxonomy>
                        <id>4530</id>
                        <code>ORYSA</code>
                        <scientific_name>Oryza sativa</scientific_name>
                        <common_name>Rice</common_name>
                      </taxonomy>
                    </clade>
                  </clade>
                  <clade branch_length="1.640600">
                    <confidence type="bootstrap">100.000000</confidence>
                    <clade branch_length="1.018200">
                      <confidence type="bootstrap">100.000000</confidence>
                      <clade branch_length="5.982500">
                        <name>VITVI</name>
                        <taxonomy>
                          <id>29760</id>
                          <code>VITVI</code>
                          <scientific_name>Vitis vinifera</scientific_name>
                          <common_name>Grape</common_name>
                        </taxonomy>
                      </clade>
                      <clade branch_length="6.506900">
                        <name>POPTR</name>
                        <taxonomy>
                          <id>3694</id>
                          <code>POPTR</code>
                          <scientific_name>Populus trichocarpa</scientific_name>
                          <common_name>Western balsam poplar</common_name>
                        </taxonomy>
                      </clade>
                    </clade>
                    <clade branch_length="9.303300">
                      <name>ARATH</name>
                      <taxonomy>
                        <id>3702</id>
                        <code>ARATH</code>
                        <scientific_name>Arabidopsis thaliana</scientific_name>
                        <common_name>Thale cress / Mouse-ear cress</common_name>
                      </taxonomy>
                    </clade>
                  </clade>
                </clade>
              </clade>
              <clade branch_length="33.436900">
                <name>DICDI</name>
                <taxonomy>
                  <id>44689</id>
                  <code>DICDI</code>
                  <scientific_name>Dictyostelium discoideum</scientific_name>
                  <common_name>Slime mold</common_name>
                </taxonomy>
              </clade>
            </clade>
          </clade>
        </clade>
        <clade branch_length="2.260600">
          <confidence type="bootstrap">100.000000</confidence>
          <clade branch_length="33.886700">
            <name>CAEEL</name>
            <taxonomy>
              <id>6239</id>
              <code>CAEEL</code>
              <scientific_name>Caenorhabditis elegans</scientific_name>
              <common_name>Nematode</common_name>
            </taxonomy>
          </clade>
          <clade branch_length="30.205100">
            <name>MONBE</name>
            <taxonomy>
              <id>81824</id>
              <code>MONBE</code>
              <scientific_name>Monosiga brevicollis</scientific_name>
            </taxonomy>
          </clade>
        </clade>
      </clade>
    </clade>
    <clade branch_length="48.981400">
      <name>ENCCU</name>
      <taxonomy>
        <id>6035</id>
        <code>ENCCU</code>
        <scientific_name>Encephalitozoon cuniculi</scientific_name>
      </taxonomy>
    </clade>
  </clade>
</phylogeny>
</phyloxml>

