Status of the OMA Orthologs Project

This page displays the current status of the orthologs project that is currently under way in the Computational Biochemistry Research Group (CBRG) of the ETH Zürich and is automatically updated every hour. There are several other webpages related to the OMA project:
  • The project homepage
  • A webpage describing algorithm.
  • A webpage with timing statistics of the over 300 CPUs used.
  • A page with facts and figures about the over 3 billion alignments collected so far.
  • All trees are downloadable in the Newick tree format and you can explore the trees using the ATV tree viewer applet.
  • The OMA groups can be explored with the OMA Browser which can be found under omabrowser.org.


    • The latest matrices contain 859 species: (go to list)

    830 Species
    Apr 19
    422682 orthologous groups
    7.4 proteins per group
    57 Archaea
    Jun 29
    17405 orthologous groups
    5.6 proteins per group     		690 Bacteria
    Apr 14
    220364 orthologous groups
    9.0 proteins per group     		86 Eukaryota
    Apr 01
    188395 orthologous groups
    5.5 proteins per group
    187 Gammaproteobacteria
    Jun 07
    50470 orthologous groups
    12.2 proteins per group     		193 other Proteobacteria
    Mar 06
    76347 orthologous groups
    8.2 proteins per group     		58 Metazoa
    Jun 25
    135738 orthologous groups
    6.3 proteins per group
    134 Firmicutes
    Jun 29
    35079 orthologous groups
    9.3 proteins per group     		34 Cyanobacteria
    Jun 14
    13068 orthologous groups
    6.7 proteins per group     		33 Mammalia
    Jun 09
    62156 orthologous groups
    8.4 proteins per group
    55 Actinobacteria
    Jun 14
    30639 orthologous groups
    6.3 proteins per group     		109 other Bacteria
    Jun 29
    31563 orthologous groups
    5.5 proteins per group     		32 other Eukaryota
    Sep 08
    57607 orthologous groups
    3.7 proteins per group

    Currently in the all-against-all

    TAEGU - Taeniopygia guttata (Zebra finch) (81% completed)
    [Metazoa - Eumetazoa]

    Recently added to the matrices

    Jun 29: HALLT - Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) [Euryarchaeota - Halobacteria]
    Jun 28: DESK1 - Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) [Crenarchaeota - Thermoprotei]
    Jun 28: METPE - Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) [Euryarchaeota - Methanomicrobia]

    Finished all-all, but missing in matrices

    39 Species
    33 Bacteria
    4 Gammaproteobacteria: BUCAT, ECO55, ECO7I, PSEA8
    3 Eukaryota: ANOCA, CAEJA, CHOHO
    6 other Proteobacteria

    The Latest Trees

    Species trees can be constructed by several methods. We found that best trees according to biological classifications are the PAM distance trees, where the distances are determined by the average PAM distance between every pair of species. The optimal set of OMA groups from which the distance averages are calculated is based on the "dimensionless fitting index". This is a normalized measure of how well a set of distance estimates can be fit on a tree.

    Tree of Archaea

    Tree info: All Archaeal genomes (max Length) , Mon Jun 29 08:56:05 2009, 57 species, 17405 orthologs, 14 top groups, 146 used here, Weighted, BestDimless
    DimlessQual: best: 3.705, ave: 4.076 +- 0.013, var: 0.0445, Z=-1.76
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Archaea
    Color code:
    Euryarchaeota
    Desulfurococcales
    Pyrobaculum
    Sulfolobales
    Caldivirga
    Thermoproteus
    Thermofilaceae
    Cenarchaeales
    Nitrosopumilales
    Korarchaeota
    Nanoarchaeota


    Recently added:
    Jun 29: HALLT - Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
    Jun 28: DESK1 - Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)
    Jun 28: METPE - Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)

    Tree of Bacteria

    Tree info: All Bacterial genomes, Wed Jun 27 01:46:01 2007, 340 species, 114863 orthologs, 943 used here, Arithmetic, BestDimless
    DimlessQual: best: 4.3995, ave: 4.997 +- 0.011, var: 0.03114, Z=-3.386
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Bacteria
    Color code:
    Proteobacteria
    Firmicutes
    Actinobacteria
    Cyanobacteria
    Spirochaetes
    Bacteroidetes
    Chlamydiae
    Chlorobi
    Deinococcus-Thermus
    Acidobacteria
    Chloroflexi
    Aquificae
    Fusobacteria
    Planctomycetes
    Thermotogales
    Eukaryota


    Recently added:
    Jun 18: YERPN - Yersinia pestis (biovar Antiqua strain Nepal516)
    Jun 17: VEREI - Verminephrobacter eiseniae (strain EF01-2)
    Jun 3: DESDG - Desulfovibrio desulfuricans (strain G20)

    Tree of Gammaproteobacteria

    Tree info: All Gammaproteobacteria (max Length) , Sun Jun 7 17:39:12 2009, 187 species, 50470 orthologs, 40 top groups, 410 used here, Arithmetic, BestDimless
    DimlessQual: best: 0.47608, ave: 0.4888 +- 0.0010, var: 0.0002593, Z=-0.7902
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Gammaproteobacteria
    Color code:
    Enterobacteriales
    Alteromonadales
    Pseudomonadales
    Xanthomonadales
    Pasteurellales
    Thiotrichales
    Vibrionales
    Legionellales
    Oceanospirillales
    Chromatiales
    Acidithiobacillales
    Aeromonadales
    sulfur-oxidizing symbionts
    Baumannia
    Cardiobacteriales
    Methylococcales


    Recently added:
    Jun 4: SHEPW - Shewanella piezotolerans (strain WP3 / JCM 13877)
    Jun 2: ECOLU - Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
    Jun 1: ACIF2 - Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)

    Tree of other Proteobacteria

    Tree info: Other Proteobacteria (max Length) , Sat Nov 15 09:37:22 2008, 179 species, 71816 orthologs, 106 top groups, 353 used here, Weighted, BestSubset, DimlessQual: best: 0.29371, ave: 0.4040 +- 0.0019, var: 0.0009157, Z=-3.645
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of other Proteobacteria
    Color code:
    Burkholderiales
    Rhizobiales
    Rickettsiales
    Epsilonproteobacteria
    Deltaproteobacteria
    Rhodobacteraceae
    Neisseriales
    Rhodospirillales
    Sphingomonadales
    Nitrosomonadales
    Rhodocyclales
    Hyphomonadaceae
    Caulobacterales
    Hydrogenophilales
    Methylophilales
    Magnetococcus


    Recently added:
    Nov 9: HELPS - Helicobacter pylori (strain Shi470)
    Nov 9: GEOLS - Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
    Nov 6: DESOH - Desulfococcus oleovorans (strain DSM 6200 / Hxd3)

    Tree of Firmicutes

    Tree info: All Firmicutes (max Length) , Mon Jun 29 16:09:46 2009, 134 species, 35079 orthologs, 32 top groups, 170 used here, Weighted, BestSubset
    DimlessQual: best: 0.21951, ave: 0.25104 +- 0.00074, var: 0.0001413, Z=-2.653
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Firmicutes
    Color code:
    Clostridiales
    Streptococcus
    Bacillaceae
    Staphylococcaceae
    Lactobacillus
    Listeriaceae
    Thermoanaerobacteraceae
    Lactococcus
    Leuconostoc
    Thermodesulfobiaceae
    Pediococcus
    Halanaerobiales
    Natranaerobiales
    Bacillales Family XII. Incertae Sedis
    Enterococcaceae
    Oenococcus


    Recently added:
    Jun 26: CLOCE - Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)
    Jun 16: STRE4 - Streptococcus equi subsp. equi (strain 4047)
    Jun 11: LISMH - Listeria monocytogenes serotype 4a (strain HCC23)

    Tree of Cyanobacteria

    Tree info: All Cyanobacteria (max Length) , Sun Jun 14 20:18:36 2009, 34 species, 13068 orthologs, 1 top groups, 223 used here, Weighted, BestSubset
    DimlessQual: best: 1.4624, ave: 1.5771 +- 0.0058, var: 0.008877, Z=-1.217
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Cyanobacteria
    Color code:
    Chroococcales
    Prochlorales
    Nostocales
    Acaryochloris
    Oscillatoriales


    Recently added:
    Jun 14: CYAP4 - Cyanothece sp. (strain PCC 7425 / ATCC 29141)
    May 21: THEEB - Thermosynechococcus elongatus (strain BP-1)
    Dec 7: PROM4 - Prochlorococcus marinus (strain MIT 9211)

    Tree of Actinobacteria

    Tree info: All Actinobacteria (max Length) , Sun Jun 14 21:27:58 2009, 55 species, 30639 orthologs, 7 top groups, 164 used here, Weighted, BestSubset
    DimlessQual: best: 0.37176, ave: 0.4045 +- 0.0011, var: 0.0003253, Z=-1.813
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Actinobacteria
    Color code:
    Actinomycetales
    Bifidobacteriales
    Rubrobacteridae
    Symbiobacterium


    Recently added:
    Jun 13: ARTCA - Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
    May 21: MYCLB - Mycobacterium leprae (strain Br4923)
    Jan 16: MYCA9 - Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)

    Tree of other Bacteria

    Tree info: Other Bacteria (max Length) , Mon Jun 29 09:41:06 2009, 109 species, 31563 orthologs, 64 top groups, 158 used here, Weighted, BestSubset
    DimlessQual: best: 1.3203, ave: 1.7837 +- 0.0094, var: 0.02293, Z=-3.06
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of other Bacteria
    Color code:
    Tenericutes
    Bacteroidetes
    Spirochaetaceae
    Chlorobi
    Chlamydiae
    Chloroflexi
    Thermotogae
    Leptospiraceae
    Deinococcus-Thermus
    Aquificae
    Verrucomicrobia
    Acidobacteria
    candidate division TG1
    Dictyoglomi
    Fusobacteria
    Planctomycetes


    Recently added:
    Jun 27: CHLAD - Chloroflexus aggregans (strain MD-66 / DSM 9485)
    Jun 12: BORBZ - Borrelia burgdorferi (strain ZS7)
    Jun 10: AZOPC - Azobacteroides pseudotrichonymphae genomovar. CFP2

    Tree of Eukaryota

    Tree info: All Eukaryotal genomes, Wed Apr 1 11:33:41 2009, 86 species, 188395 orthologs, 49 top groups, 1024 used here, Arithmetic, BestSubset
    DimlessQual: best: 0.034138, ave: 0.05662 +- 0.00017, var: 7.242e-06, Z=-8.356
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Eukaryota
    Color code:
    Mammalia
    Fungi
    Protostomia
    Viridiplantae
    Actinopterygii
    Pseudocoelomata
    Euglenozoa
    Urochordata
    Alveolata
    Sauropsida
    Amphibia
    Cephalochordata
    Cnidaria
    Mycetozoa


    Recently added:
    Mar 9: GORGO - Gorilla gorilla (Gorilla)
    Feb 27: TARSY - Tarsius syrichta (Tarsier)
    Feb 20: DIPOR - Dipodomys ordii (Kangaroo rat)

    Tree of Metazoa

    Tree info: All Metazoa (max Length) , Thu Jun 25 07:43:45 2009, 58 species, 135738 orthologs, 18 top groups, 693 used here, Arithmetic, BestSubset
    DimlessQual: best: 0.016976, ave: 0.03283 +- 0.00015, var: 6.101e-06, Z=-6.419
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Metazoa
    Color code:
    Eutheria
    Protostomia
    Actinopterygii
    Pseudocoelomata
    Sauropsida
    Urochordata
    Metatheria
    Prototheria
    Amphibia
    Cephalochordata
    Cnidaria


    Recently added:
    Jun 22: ANOCA - Anolis carolinensis (Anole lizard)
    Jun 8: CHOHO - Choloepus hoffmanni (Sloth)
    May 28: CAEJA - Caenorhabditis japonica (Nematode)

    Tree of Mammalia

    Tree info: All Mammalia (max Length) , Tue Jun 9 01:29:42 2009, 33 species, 62156 orthologs, 4 top groups, 489 used here, AveVarWeighted, BestSubset
    DimlessQual: best: 0.27958, ave: 0.4101 +- 0.0027, var: 0.001909, Z=-2.987
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of Mammalia
    Color code:
    Laurasiatheria
    Primates
    Glires
    Afrotheria
    Xenarthra
    Scandentia
    Metatheria
    Prototheria


    Recently added:
    Jun 8: Sloth - Choloepus hoffmanni
    Mar 9: Gorilla - Gorilla gorilla
    Feb 27: Tarsier - Tarsius syrichta

    Tree of other Eukaryota

    Tree info: Eukaryota excluding Metazoa (max Length) , Mon Sep 8 12:30:34 2008, 32 species, 57607 orthologs, 12 top groups, 302 used here, Arithmetic, BestSubset
    DimlessQual: best: 0.49071, ave: 0.7330 +- 0.0035, var: 0.003273, Z=-4.236
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file or a Darwin script to plot your own tree.
    Tree of other Eukaryota
    Color code:
    Ascomycota
    Viridiplantae
    Euglenozoa
    Basidiomycota
    Alveolata
    Microsporidia
    Metazoa
    Mycetozoa


    Recently added:
    Aug 23: LACBI - Laccaria bicolor
    Aug 7: SORBI - Sorghum bicolor (Sorghum)
    Mar 6: VITVI - Vitis vinifera (Grape)

    List of Species

    Click on a 5-letter code for more information about a particular species
    "Maa" stands for "million amino acids" and "Coverage" indicates the percentage of sequences which form part of some orthologous group.
    Scientific Name# Seqs Maa Coverage
    ACAM1Acaryochloris marina (strain MBIC 11017)81482.25
     49%
    ACHLIAcholeplasma laidlawii (strain PG-8A)13800.45
    62% 
    ACIACAcidovorax avenae subsp. citrulli (strain AAC00-1)46011.56
    86% 
    ACIADAcinetobacter sp. (strain ADP1)33071.05
    87% 
    ACIB3Acinetobacter baumannii (strain AB307-0294)34521.08
    95% 
    ACIB5Acinetobacter baumannii (strain AB0057)37321.14
    94% 
    ACIBCAcinetobacter baumannii (strain ACICU)37431.15
    92% 
    ACIBLAcidobacteria bacterium (strain Ellin345)47701.68
    63% 
    ACIBSAcinetobacter baumannii (strain SDF)32870.94
    79% 
    ACIBTAcinetobacter baumannii (strain ATCC 17978 / NCDC KC 755)33640.95
    84% 
    ACIBYAcinetobacter baumannii (strain AYE)37151.16
    95% 
    ACIC1Acidothermus cellulolyticus (strain ATCC 43068 / 11B)21570.73
    83% 
    ACICJAcidiphilium cryptum (strain JF-5)35181.17
    82% 
    ACIF2Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)31190.88
    80% 
    ACIF5Acidithiobacillus ferrooxidans (strain ATCC 53993)27450.83
    90% 
    ACISJAcidovorax sp. (strain JS42)40421.30
    92% 
    ACTP2Actinobacillus pleuropneumoniae serotype 5b (strain L20)20020.65
    98% 
    ACTP7Actinobacillus pleuropneumoniae serotype 7 (strain AP76)21090.67
    96% 
    ACTPJActinobacillus pleuropneumoniae serotype 3 (strain JL03)20240.64
    97% 
    ACTSZActinobacillus succinogenes (strain ATCC 55618 / 130Z)20770.68
    95% 
    AEDAEAedes aegypti (Yellow fever mosquito)151297.11
    68% 
    AERHHAeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)41201.38
    94% 
    AERPEAeropyrum pernix16990.49
    69% 
    AERS4Aeromonas salmonicida (strain A449)43021.34
    91% 
    AGRT5Agrobacterium tumefaciens52741.69
    87% 
    AKKM8Akkermansia muciniphila (strain ATCC BAA-835)21370.77
    60% 
    ALCBSAlcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)27520.91
    86% 
    ALHEHAlkalilimnicola ehrlichei (strain MLHE-1)28620.98
    84% 
    ALISLAliivibrio salmonicida (strain LFI1238)37961.22
    90% 
    ALKMQAlkaliphilus metalliredigens (strain QYMF)44631.32
    77% 
    ALKOOAlkaliphilus oremlandii (strain OhILAs)28280.87
    88% 
    ALTMDAlteromonas macleodii (strain DSM 17117 / Deep ecotype)40461.26
    76% 
    AMOA5Amoebophilus asiaticus (strain 5a2)12410.47
    54% 
    ANADEAnaeromyxobacter dehalogenans (strain 2CP-C)43441.52
    95% 
    ANADFAnaeromyxobacter sp. (strain Fw109-5)44611.58
    87% 
    ANAMMAnaplasma marginale (strain St. Maries)9400.34
    80% 
    ANAPZAnaplasma phagocytophilum (strain HZ)12340.33
    58% 
    ANASKAnaeromyxobacter sp. (strain K)44441.52
    94% 
    ANASPAnabaena sp.60421.95
    85% 
    ANATDAnaerocellum thermophilum (strain DSM 6725 / Z-1320)26480.83
    82% 
    ANAVTAnabaena variabilis (strain ATCC 29413 / PCC 7937)56241.91
    90% 
    ANOCAAnolis carolinensis (Anole lizard)176028.10
    88% 
    ANOGAAnopheles gambiae (African malaria mosquito)124995.95
    76% 
    APIMEApis mellifera (Honeybee)109353.31
    58% 
    AQUAEAquifex aeolicus15530.49
    79% 
    ARATHArabidopsis thaliana (Thale cress / Mouse-ear cress)2649611.02
    66% 
    ARCB4Arcobacter butzleri (strain RM4018)22540.72
    82% 
    ARCFUArchaeoglobus fulgidus23950.66
    66% 
    ARTATArthrobacter aurescens (strain TC1)45611.51
    85% 
    ARTCAArthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)45861.47
    82% 
    ARTS2Arthrobacter sp. (strain FB24)44531.49
    89% 
    ASHGOAshbya gossypii (Yeast)47072.31
    87% 
    ASPFUAspergillus fumigatus98324.76
    67% 
    AYWBPAster yellows witches'-broom phytoplasma (strain AYWB)6810.18
    69% 
    AZOC5Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)47061.60
    90% 
    AZOPCAzobacteroides pseudotrichonymphae genomovar. CFP28470.29
    82% 
    AZOSBAzoarcus sp. (strain BH72)39801.33
    91% 
    AZOSEAzoarcus sp. (strain EbN1)44441.38
    78% 
    BACA2Bacillus amyloliquefaciens (strain FZB42)36911.15
    93% 
    BACAHBacillus thuringiensis (strain Al Hakam)47921.46
    96% 
    BACANBacillus anthracis56111.46
    88% 
    BACC1Bacillus cereus (strain ATCC 10987)55931.48
    86% 
    BACC2Bacillus cereus (strain G9842)58441.59
    86% 
    BACCNBacillus cereus subsp. cytotoxis (strain NVH 391-98)38391.08
    91% 
    BACCRBacillus cereus (strain ATCC 14579 / DSM 31)52371.45
    93% 
    BACCZBacillus cereus (strain ZK)51331.48
    97% 
    BACFNBacteroides fragilis (strain ATCC 25285 / NCTC 9343)43021.55
    89% 
    BACFRBacteroides fragilis46081.59
    84% 
    BACHDBacillus halodurans39961.16
    82% 
    BACHKBacillus thuringiensis (subsp. konkukian)50821.45
    97% 
    BACLDBacillus licheniformis (strain DSM 13 / ATCC 14580)41351.20
    89% 
    BACP2Bacillus pumilus (strain SAFR-032)36741.07
    88% 
    BACSKBacillus clausii (strain KSM-K16)41021.23
    86% 
    BACSUBacillus subtilis41041.22
    89% 
    BACTNBacteroides thetaiotaomicron47501.86
    73% 
    BACV8Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)39801.49
    78% 
    BACWKBacillus weihenstephanensis (strain KBAB4)56501.59
    90% 
    BARBKBartonella bacilliformis (strain ATCC 35685 / KC583)12510.38
    85% 
    BARHEBartonella henselae15770.48
    86% 
    BARQUBartonella quintana13010.41
    87% 
    BART1Bartonella tribocorum (strain CIP 105476 / IBS 506)19520.60
    78% 
    BAUCHBaumannia cicadellinicola (subsp. Homalodisca coagulata)5950.19
    98% 
    BDEBABdellovibrio bacteriovorus35861.17
    53% 
    BEII9Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)37741.21
    82% 
    BIFAABifidobacterium adolescentis (strain ATCC 15703 / DSM 20083)16270.60
    78% 
    BIFLDBifidobacterium longum (strain DJO10A)19770.68
    82% 
    BIFLOBifidobacterium longum17200.64
    89% 
    BLOFLCandidatus Blochmannia floridanus5890.20
    97% 
    BLOPBBlochmannia pennsylvanicus (strain BPEN)6100.20
    97% 
    BORA1Bordetella avium (strain 197N)34061.12
    90% 
    BORAPBorrelia afzelii (strain PKo)12610.36
    84% 
    BORBRBordetella bronchiseptica49711.63
    97% 
    BORBUBorrelia burgdorferi (Lyme disease spirochete)15230.41
    79% 
    BORBZBorrelia burgdorferi (strain ZS7)12230.37
    93% 
    BORDLBorrelia duttonii (strain Ly)12850.42
    87% 
    BORGABorrelia garinii12680.36
    82% 
    BORHDBorrelia hermsii (strain DAH)8190.29
    99% 
    BORPABordetella parapertussis43651.45
    98% 
    BORPDBordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)49311.57
    91% 
    BORPEBordetella pertussis35501.17
    96% 
    BORRABorrelia recurrentis (strain A1)9770.33
    98% 
    BORT9Borrelia turicatae (strain 91E135)8180.29
    100% 
    BOTFBBotrytis cinerea162995.47
     40%
    BOVINBos taurus (Cow)2133810.63
    91% 
    BRAFLBranchiostoma floridae (Lancelet)2846413.24
     46%
    BRAJABradyrhizobium japonicum82352.61
    83% 
    BRASBBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)75612.40
    90% 
    BRASOBradyrhizobium sp. (strain ORS278)67342.12
    90% 
    BRUA1Brucella abortus (strain S19)29890.91
    96% 
    BRUA2Brucella abortus (strain 2308)33290.95
    93% 
    BRUABBrucella abortus30720.89
    95% 
    BRUC2Brucella canis (strain ATCC 23365 / NCTC 10854)32350.93
    95% 
    BRUMEBrucella melitensis31790.95
    94% 
    BRUO2Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)28190.85
    95% 
    BRUSIBrucella suis (strain ATCC 23445 / NCTC 10510)32130.92
    95% 
    BRUSUBrucella suis32460.93
    94% 
    BUCAIBuchnera aphidicola (subsp. Acyrthosiphon pisum)5730.19
    98% 
    BUCAPBuchnera aphidicola (subsp. Schizaphis graminum)5550.18
    99% 
    BUCBPBuchnera aphidicola (subsp. Baizongia pistaciae)5070.17
    96% 
    BUCCCBuchnera aphidicola subsp. Cinara cedri3650.12
    92% 
    BURA4Burkholderia ambifaria (strain MC40-6)66892.19
    95% 
    BURCABurkholderia cenocepacia (strain AU 1054)64502.09
    99% 
    BURCCBurkholderia cenocepacia (strain MC0-3)69842.29
    97% 
    BURCHBurkholderia cenocepacia (strain HI2424)68972.23
    98% 
    BURCJBurkholderia cepacia (strain J2315 / LMG 16656)71202.31
    96% 
    BURCMBurkholderia cepacia (strain ATCC 53795 / AMMD)66072.18
    96% 
    BURM1Burkholderia multivorans (strain ATCC 17616 / 249)65852.11
    92% 
    BURM7Burkholderia mallei (strain NCTC 10247)56171.63
    91% 
    BURM9Burkholderia mallei (strain NCTC 10229)53081.60
    92% 
    BURMABurkholderia mallei47971.51
    90% 
    BURMSBurkholderia mallei (strain SAVP1)49751.47
    91% 
    BURP0Burkholderia pseudomallei (strain 1106a)71462.07
    85% 
    BURP1Burkholderia pseudomallei (strain 1710b)63102.45
    87% 
    BURP6Burkholderia pseudomallei (strain 668)72142.07
    84% 
    BURP8Burkholderia phymatum (strain DSM 17167 / STM815)74612.42
    88% 
    BURPPBurkholderia phytofirmans (strain DSM 17436 / PsJN)71972.32
    93% 
    BURPSBurkholderia pseudomallei58182.00
    97% 
    BURS3Burkholderia sp. (strain 383)77062.52
    93% 
    BURTABurkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)55251.92
    92% 
    BURVGBurkholderia vietnamiensis (strain G4 / LMG 22486)74012.32
    85% 
    BURXLBurkholderia xenovorans (strain LB400)85892.75
    87% 
    CAEBRCaenorhabditis briggsae192367.96
    75% 
    CAEELCaenorhabditis elegans (Nematode)201848.44
    72% 
    CAEJACaenorhabditis japonica (Nematode)189717.37
    60% 
    CAERECaenorhabditis remanei175485.60
    72% 
    CALMQCaldivirga maquilingensis (strain DSMZ 13496 / IC-167)19620.60
    71% 
    CALS8Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)26190.83
    87% 
    CAMC1Campylobacter concisus (strain 13826)20600.62
    81% 
    CAMC5Campylobacter curvus (strain 525.92)19280.57
    86% 
    CAMFFCampylobacter fetus subsp. fetus (strain 82-40)17150.53
    87% 
    CAMHCCampylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)16870.48
    72% 
    CAMJ8Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)16220.51
    95% 
    CAMJDCampylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)17100.50
    88% 
    CAMJECampylobacter jejuni16530.52
    95% 
    CAMJJCampylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)17470.53
    91% 
    CAMJRCampylobacter jejuni (strain RM1221)18320.54
    88% 
    CANALCandida albicans (Yeast)56202.73
    85% 
    CANFACanis familiaris (Dog)2020810.50
    94% 
    CANGACandida glabrata (Yeast)52572.64
    84% 
    CARHZCarboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)25980.72
    74% 
    CARRPCarsonella ruddii (strain PV)1820.05
     45%
    CAUCRCaulobacter vibrioides37101.20
    87% 
    CAUSKCaulobacter sp. (strain K31)53711.71
    85% 
    CAVPOCavia porcellus (Guinea pig)1894010.00
    94% 
    CELJUCellvibrio japonicus (strain Ueda107)37121.37
    78% 
    CENSYCenarchaeum symbiosum20130.62
    58% 
    CHICKGallus gallus (Chicken)173938.41
    79% 
    CHLAAChloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)38501.41
    92% 
    CHLABChlamydophila abortus9600.34
    97% 
    CHLADChloroflexus aggregans (strain MD-66 / DSM 9485)37251.35
    91% 
    CHLCHChlorobium chlorochromatii (strain CaD3)19900.75
    87% 
    CHLCVChlamydophila caviae10040.35
    95% 
    CHLFFChlamydophila felis (strain Fe/C-56)10120.36
    95% 
    CHLL2Chlorobium limicola (strain DSM 245 / NBRC 103803)24190.79
    89% 
    CHLMUChlamydia muridarum9110.32
    94% 
    CHLP8Chlorobaculum parvum (strain NCIB 8327)20440.66
    93% 
    CHLPBChlorobium phaeobacteroides (strain BS1)24340.74
    85% 
    CHLPDChlorobium phaeobacteroides (strain DSM 266)25790.85
    86% 
    CHLPNChlamydia pneumoniae14790.50
    62% 
    CHLT2Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B)8980.31
    99% 
    CHLT3Chloroherpeton thalassium (strain ATCC 35110 / GB-78)27080.95
    73% 
    CHLTAChlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B)9190.32
    97% 
    CHLTBChlamydia trachomatis (strain L2b/UCH-1/proctitis)8970.31
    99% 
    CHLTEChlorobium tepidum22460.63
    78% 
    CHLTRChlamydia trachomatis8950.31
    99% 
    CHOHOCholoepus hoffmanni (Sloth)123295.43
    92% 
    CHRSDChromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)32981.10
    87% 
    CHRVOChromobacterium violaceum43981.40
    81% 
    CIOINCiona intestinalis (Sea Squirt)155585.93
    61% 
    CIOSACiona savignyi (Pacific transparent sea squirt)138945.28
    63% 
    CITK8Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)50171.44
    81% 
    CLAM3Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)31071.01
    91% 
    CLAMSClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)31661.00
    86% 
    CLOABClostridium acetobutylicum38451.18
    77% 
    CLOB1Clostridium botulinum (strain ATCC 19397 / Type A)35471.04
    94% 
    CLOB8Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)50031.58
    81% 
    CLOBAClostridium botulinum (strain Alaska E43 / type E3)32531.00
    92% 
    CLOBBClostridium botulinum (strain Eklund 17B / type B)35251.05
    87% 
    CLOBHClostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)36691.06
    93% 
    CLOBKClostridium botulinum (strain Okra / Type B1)38501.10
    92% 
    CLOBLClostridium botulinum (strain Langeland / NCTC 10281 / Type F)36331.07
    93% 
    CLOBMClostridium botulinum (strain Loch Maree / Type A3)39821.15
    89% 
    CLOCEClostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)32861.14
    75% 
    CLOD6Clostridium difficile (strain 630)37441.18
    78% 
    CLOK5Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)38231.11
    77% 
    CLONNClostridium novyi (strain NT)23050.73
    85% 
    CLOP1Clostridium perfringens (strain ATCC 13124 / NCTC 8237)28730.90
    94% 
    CLOPEClostridium perfringens27210.86
    94% 
    CLOPHClostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)38891.31
    70% 
    CLOPSClostridium perfringens (strain SM101)25660.79
    93% 
    CLOTEClostridium tetani23460.79
    89% 
    CLOTHClostridium thermocellum (strain ATCC 27405 / DSM 1237)31021.04
    73% 
    COLP3Colwellia psychrerythraea (strain 34H / ATCC BAA-681)48681.50
    74% 
    COPPDCoprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)14810.44
    62% 
    CORDICorynebacterium diphtheriae23100.74
    79% 
    COREFCorynebacterium efficiens29330.96
    82% 
    CORGBCorynebacterium glutamicum (strain R)30760.96
    89% 
    CORGLCorynebacterium glutamicum35161.10
    80% 
    CORJKCorynebacterium jeikeium (strain K411)20460.71
    87% 
    CORU7Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)20090.70
    84% 
    COXB2Coxiella burnetii (strain CbuG_Q212)18260.51
    85% 
    COXBNCoxiella burnetii (strain Dugway 5J108-111)21100.62
    83% 
    COXBRCoxiella burnetii (strain RSA 331 / Henzerling II)18890.51
    88% 
    COXBUCoxiella burnetii20200.56
    87% 
    CRYNECryptococcus neoformans62313.34
    63% 
    CRYPVCryptosporidium parvum38042.27
     34%
    CUPTRCupriavidus taiwanensis (strain R1 / LMG 19424)59001.89
    91% 
    CYAA5Cyanothece (strain ATCC 51142)52331.56
    72% 
    CYAP4Cyanothece sp. (strain PCC 7425 / ATCC 29141)52311.61
    72% 
    CYTH3Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)37701.33
    61% 
    DANREDanio rerio (Zebrafish)2303910.46
    77% 
    DAPPUDaphnia pulex (Water flea)300889.92
     30%
    DASNODasypus novemcinctus (Armadillo)153846.16
    84% 
    DEBHADebaryomyces hansenii (Yeast)68803.07
    77% 
    DECARDechloromonas aromatica (strain RCB)41491.37
    87% 
    DEHE1Dehalococcoides ethenogenes (strain 195)15000.42
    86% 
    DEHSBDehalococcoides sp. (strain BAV1)13550.40
    93% 
    DEHSCDehalococcoides sp. (strain CBDB1)14530.42
    89% 
    DEIGDDeinococcus geothermalis (strain DSM 11300)28210.90
    82% 
    DEIRADeinococcus radiodurans30770.95
    70% 
    DELASDelftia acidovorans (strain DSM 14801 / SPH-1)59662.00
    88% 
    DESAPDesulforudis audaxviator (strain MP104C)21350.66
    78% 
    DESDGDesulfovibrio desulfuricans (strain G20)37191.11
    73% 
    DESHYDesulfitobacterium hafniense (strain Y51)50151.60
    68% 
    DESK1Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)14700.40
    74% 
    DESOHDesulfococcus oleovorans (strain DSM 6200 / Hxd3)32551.15
    75% 
    DESPSDesulfotalea psychrophila32351.04
    72% 
    DESRMDesulfotomaculum reducens (strain MI-1)32140.98
    78% 
    DESVHDesulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)35141.07
    83% 
    DESVVDesulfovibrio vulgaris subsp. vulgaris (strain DP4)30841.04
    95% 
    DICDIDictyostelium discoideum (Slime mold)128916.74
     30%
    DICNVDichelobacter nodosus (strain VCS1703A)12730.42
    77% 
    DICT6Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)19120.61
    73% 
    DINSHDinoroseobacter shibae (strain DFL 12)40741.29
    86% 
    DIPORDipodomys ordii (Kangaroo rat)156657.82
    95% 
    DROMEDrosophila melanogaster (Fruitfly)143217.55
    78% 
    DROPSDrosophila pseudoobscura (Fruit Fly)98185.10
    94% 
    ECHTEEchinops telfairi (Tenrec)165197.37
    89% 
    ECO24Escherichia coli O139:H28 (strain E24377A / ETEC)49121.47
    90% 
    ECO57Escherichia coli O157:H752021.59
    93% 
    ECO5EEscherichia coli O157:H7 (strain EC4115 / EHEC)52721.54
    89% 
    ECODHEscherichia coli (strain DH10B)40501.27
    98% 
    ECOHSEscherichia coli O9:H4 (strain HS)43101.32
    93% 
    ECOK1Escherichia coli O1:K1 / APEC48641.59
    96% 
    ECOL5Escherichia coli O6:K15:H31 (strain 536)46461.45
    94% 
    ECOL6Escherichia coli O653361.56
    90% 
    ECOLCEscherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)41711.35
    99% 
    ECOLIEscherichia coli (strain K12)43521.37
    97% 
    ECOLUEscherichia coli O17:K52:H18 (strain UMN026 / ExPEC)50541.57
    95% 
    ECOSEEscherichia coli (strain SE11)49821.51
    93% 
    ECOSMEscherichia coli (strain SMS-3-5 / SECEC)48761.50
    93% 
    ECOUTEscherichia coli (strain UTI89 / UPEC)51901.56
    95% 
    EHRCJEhrlichia canis (strain Jake)9210.31
    89% 
    EHRCREhrlichia chaffeensis (strain Arkansas)10970.31
    74% 
    EHRRGEhrlichia ruminantium (strain Gardel)9490.32
    96% 
    EHRRWEhrlichia ruminantium (strain Welgevonden)9580.32
    96% 
    ELUMPElusimicrobium minutum (strain Pei191)15280.49
    58% 
    ENCCUEncephalitozoon cuniculi18900.69
     32%
    ENT38Enterobacter sp. (strain 638)42361.36
    95% 
    ENTFAEnterococcus faecalis32290.95
    73% 
    ENTS8Enterobacter sakazakii (strain ATCC BAA-894)42551.29
    85% 
    ERIEUErinaceus europaeus (Hedgehog )144896.65
    92% 
    ERWCTErwinia carotovora (subsp. atroseptica)44761.45
    88% 
    ERWT9Erwinia tasmaniensis (strain DSM 17950 / ET1/99)36911.16
    86% 
    ERYLHErythrobacter litoralis (strain HTCC2594)29990.93
    82% 
    EXIS2Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)30050.88
    75% 
    FELCAFelis catus (Cat)147526.69
    95% 
    FERNBFervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)17250.58
    88% 
    FINM2Finegoldia magna (strain ATCC 29328)18130.60
    71% 
    FLAJ1Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)50161.77
    69% 
    FLAPJFlavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)24280.81
    81% 
    FRAAAFrankia alni (strain ACN14a)67232.16
    69% 
    FRAP2Francisella philomiragia subsp. philomiragia (strain ATCC 25017)18750.61
    88% 
    FRASCFrankia sp. (strain CcI3)44231.51
    80% 
    FRASNFrankia sp. (strain EAN1pec)71282.47
    71% 
    FRAT1Mycobacteriophage FRAT117220.54
    99% 
    FRATFFrancisella tularensis subsp. holarctica (strain FTA)15080.46
    97% 
    FRATHFrancisella tularensis subsp. holarctica (strain LVS)18690.53
    85% 
    FRATMFrancisella tularensis subsp. mediasiatica (strain FSC147)13870.44
    99% 
    FRATNFrancisella tularensis subsp. novicida (strain U112)17190.57
    95% 
    FRATOFrancisella tularensis subsp. holarctica (strain OSU18)15060.45
    96% 
    FRATTFrancisella tularensis (subsp. tularensis)17220.54
    99% 
    FRATWFrancisella tularensis subsp. tularensis (strain WY96-3418)15730.48
    97% 
    FUGRUTakifugu rubripes (Fugu)2292912.88
    89% 
    FUSNNFusobacterium nucleatum20430.64
    60% 
    GASACGasterosteus aculeatus (Three spined stickleback)2183211.12
    87% 
    GEOBBGeobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)40091.33
    86% 
    GEOKAGeobacillus kaustophilus35031.00
    85% 
    GEOLSGeobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)36431.20
    85% 
    GEOMGGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)34611.19
    91% 
    GEOSLGeobacter sulfurreducens34091.13
    88% 
    GEOTNGeobacillus thermodenitrificans (strain NG80-2)34191.00
    88% 
    GEOURGeobacter uraniumreducens (strain Rf4)42531.45
    88% 
    GLOVIGloeobacter violaceus44061.38
    60% 
    GLUDAGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)38501.19
    78% 
    GLUOXGluconobacter oxydans26030.85
    79% 
    GORGOGorilla gorilla (Gorilla)166777.36
    94% 
    GRABCGranulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)24350.82
    84% 
    GRAFKGramella forsetii (strain KT0803)35541.14
    71% 
    GUITHGuillardia theta (nucleomorph only)5990.18
    51% 
    HAEDUHaemophilus ducreyi16930.47
    81% 
    HAEI8Haemophilus influenzae (strain 86-028NP)17880.55
    95% 
    HAEIEHaemophilus influenzae (strain PittEE)16180.48
    93% 
    HAEIGHaemophilus influenzae (strain PittGG)16650.47
    91% 
    HAEINHaemophilus influenzae17010.52
    92% 
    HAES1Haemophilus somnus (strain 129PT)17920.59
    92% 
    HAES2Haemophilus somnus (strain 2336)19710.66
    90% 
    HAHCHHahella chejuensis (strain KCTC 2396)67002.11
    64% 
    HALHLHalorhodospira halophila (strain DSM 244 / SL1)24050.82
    80% 
    HALLTHalorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)34931.01
    72% 
    HALMAHaloarcula marismortui42251.20
    67% 
    HALOHHalothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)23240.74
    76% 
    HALS3Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)27420.76
    89% 
    HALSAHalobacterium salinarium24110.68
    93% 
    HALWDHaloquadratum walsbyi (strain DSM 16790)28190.80
    70% 
    HELAHHelicobacter acinonychis (strain Sheeba)15940.46
    81% 
    HELHPHelicobacter hepaticus18690.56
    72% 
    HELMIHeliobacterium modesticaldum (strain ATCC 51547 / Ice1)29180.85
    67% 
    HELPGHelicobacter pylori (strain G27)15000.48
    94% 
    HELPHHelicobacter pylori (strain HPAG1)15390.49
    92% 
    HELPJHelicobacter pylori J9914880.49
    95% 
    HELPSHelicobacter pylori (strain Shi470)15640.48
    88% 
    HELPYHelicobacter pylori15600.50
    90% 
    HELROHelobdella robusta232638.76
     36%
    HERA2Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)52541.96
    58% 
    HERARHerminiimonas arsenicoxydans33211.00
    88% 
    HORSEEquus caballus (Horse)2027510.35
    93% 
    HUMANHomo sapiens (Human)2422512.04
    96% 
    HYDS0Hydrogenobaculum sp. (strain Y04AAS1)16260.49
    76% 
    HYPBUHyperthermus butylicus (strain DSM 5456 / JCM 9403)16020.45
    70% 
    HYPNAHyphomonas neptunium (strain ATCC 15444)34991.11
    79% 
    IDILOIdiomarina loihiensis26080.86
    88% 
    IGNH4Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)14340.40
    63% 
    JANMAJanthinobacterium sp. (strain Marseille) (Minibacterium massiliensis)36951.22
    93% 
    JANSCJannaschia sp. (strain CCS1)42691.32
    82% 
    KINRDKineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)46731.49
    72% 
    KLEP3Klebsiella pneumoniae (strain 342)57381.71
    88% 
    KLEP7Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)51161.60
    93% 
    KLULAKluyveromyces lactis (Yeast)52302.48
    83% 
    KOCRDKocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201)23530.79
    81% 
    KORCOKorarchaeum cryptofilum (strain OPF8)16020.47
    70% 
    LACACLactobacillus acidophilus18600.58
    85% 
    LACBALactobacillus brevis (strain ATCC 367 / JCM 1170)21990.65
    82% 
    LACBILaccaria bicolor200527.45
     27%
    LACC3Lactobacillus casei (strain ATCC 334)27060.78
    90% 
    LACCBLactobacillus casei (strain BL23)29990.86
    88% 
    LACDALactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081)20140.52
    77% 
    LACDBLactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365)16790.47
    88% 
    LACF3Lactobacillus fermentum (strain IFO 3956 / LMG 18251)18180.55
    86% 
    LACGALactobacillus gasseri (strain ATCC 33323 / DSM 20243)16940.54
    91% 
    LACH4Lactobacillus helveticus (strain DPC 4571)15760.50
    91% 
    LACJOLactobacillus johnsonii18120.59
    90% 
    LACLALactococcus lactis subsp. lactis22210.66
    89% 
    LACLMLactococcus lactis subsp. cremoris (strain MG1363)24530.71
    87% 
    LACLSLactococcus lactis subsp. cremoris (strain SK11)24360.68
    85% 
    LACPLLactobacillus plantarum30380.92
    81% 
    LACRDLactobacillus reuteri (strain DSM 20016)18640.56
    96% 
    LACRJLactobacillus reuteri (strain JCM 1112)17920.56
    98% 
    LACS1Lactobacillus salivarius subsp. salivarius (strain UCC118)20010.58
    79% 
    LACSSLactobacillus sakei subsp. sakei (strain 23K)18710.54
    83% 
    LAMPALama guanicoe pacos (Alpaca)116715.48
    93% 
    LAWIPLawsonia intracellularis (strain PHE/MN1-00)13440.48
    81% 
    LEGPALegionella pneumophila (strain Paris)30591.02
    94% 
    LEGPCLegionella pneumophila (strain Corby)32041.03
    91% 
    LEGPHLegionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152)29151.00
    94% 
    LEGPLLegionella pneumophila (strain Lens)29300.98
    94% 
    LEIBRLeishmania braziliensis80195.03
    91% 
    LEIINLeishmania infantum80315.02
    96% 
    LEIMALeishmania major78975.10
    98% 
    LEIXXLeifsonia xyli (subsp. xyli)19990.59
    75% 
    LEPBALeptospira biflexa serovar Patoc (strain Patoc 1 / Ames)35941.21
    99% 
    LEPBJLeptospira borgpetersenii serovar Hardjo-bovis (strain JB197)28270.92
    99% 
    LEPBLLeptospira borgpetersenii serovar Hardjo-bovis (strain L550)28710.94
    99% 
    LEPBPLeptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)37231.22
    96% 
    LEPCPLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6)43431.50
    88% 
    LEPICLeptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni)36401.15
    94% 
    LEPINLeptospira interrogans46581.21
    74% 
    LEUCKLeuconostoc citreum (strain KM20)18120.56
    88% 
    LEUMMLeuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523)20020.61
    86% 
    LISINListeria innocua30290.91
    94% 
    LISMFListeria monocytogenes (serotype 4b / strain F2365)28180.85
    96% 
    LISMHListeria monocytogenes serotype 4a (strain HCC23)29710.88
    93% 
    LISMOListeria monocytogenes28520.87
    98% 
    LISW6Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)27750.83
    93% 
    LODELLodderomyces elongisporus57722.94
    78% 
    LOTGILottia gigantea (Limpet)235148.96
    51% 
    LOXAFLoxodonta africana (Elephant)156407.46
    91% 
    LYSSCLysinibacillus sphaericus (strain C3-41)47501.28
    69% 
    MACMUMacaca mulatta (Rhesus macaque)2489111.40
    88% 
    MAGGRMagnaporthe grisea (rice blast fungus)126375.57
    54% 
    MAGMMMagnetospirillum magneticum (strain AMB-1 / ATCC 700264)45031.45
    72% 
    MAGSMMagnetococcus sp. (strain MC-1)35891.33
    69% 
    MANSMMannheimia succiniciproducens (strain MBEL55E)23660.69
    82% 
    MARAVMarinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)41681.39
    81% 
    MARMMMaricaulis maris (strain MCS10)30601.01
    81% 
    MARMSMarinomonas sp. (strain MWYL1)44151.48
    84% 
    MESFLMesoplasma florum6830.25
    75% 
    MESSBMesorhizobium sp. (strain BNC1)45301.45
    87% 
    META3Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)14900.44
    90% 
    METACMethanosarcina acetivorans44111.37
    73% 
    METB6Methanoregula boonei (strain 6A8)24500.73
    75% 
    METBFMethanosarcina barkeri (strain Fusaro / DSM 804)36001.12
    82% 
    METBUMethanococcoides burtonii (strain DSM 6242)22420.68
    79% 
    METCAMethylococcus capsulatus29210.97
    73% 
    METEPMethylobacterium extorquens (strain PA1)48221.53
    92% 
    METFKMethylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875)26080.85
    87% 
    METHJMethanospirillum hungatei (strain JF-1 / DSM 864)30840.99
    66% 
    METI4Methylokorus infernorum (strain V4)24700.69
    51% 
    METJAMethanocaldococcus jannaschii17810.51
    79% 
    METKAMethanopyrus kandleri16910.50
    57% 
    METLZMethanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)17390.52
    78% 
    METM5Methanococcus maripaludis (strain C5 / ATCC BAA-1333)18210.51
    92% 
    METM6Methanococcus maripaludis (strain C6 / ATCC BAA-1332)18250.51
    92% 
    METM7Methanococcus maripaludis (strain C7 / ATCC BAA-1331)17850.51
    95% 
    METMAMethanosarcina mazei32851.00
    86% 
    METMJMethanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)24740.71
    78% 
    METMPMethanococcus maripaludis17220.49
    97% 
    METPBMethylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)53251.65
    90% 
    METPEMethanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)26550.82
    74% 
    METPPMethylibium petroleiphilum (strain PM1)43551.38
    83% 
    METRJMethylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)63851.94
    83% 
    METS3Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)17830.55
    72% 
    METS4Methylobacterium sp. (strain 4-46)66462.08
    81% 
    METS5Metallosphaera sedula (strain ATCC 51363 / DSM 5348)22560.64
    88% 
    METSTMethanosphaera stadtmanae (strain DSM 3091)15300.49
    76% 
    METTHMethanobacterium thermoautotrophicum18710.53
    75% 
    METTPMethanosaeta thermophila (strain DSM 6194 / PT)16730.51
    77% 
    METVSMethanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)16610.48
    94% 
    MICANMicrocystis aeruginosa (strain NIES-843)59461.51
    57% 
    MICMUMicrocebus murinus (Mouse lemur)162247.67
    95% 
    MONDOMonodelphis domestica (Opossum)2184311.44
    88% 
    MOOTAMoorella thermoacetica (strain ATCC 39073)24500.75
    83% 
    MOUSEMus musculus (Mouse)2486511.87
    87% 
    MYCA1Mycobacterium avium (strain 104)50351.58
    89% 
    MYCA5Mycoplasma arthritidis (strain 158L3-1)6310.24
    65% 
    MYCA9Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)49391.57
    81% 
    MYCAPMycoplasma agalactiae (strain PG2)7480.26
    68% 
    MYCBOMycobacterium bovis39391.31
    99% 
    MYCBPMycobacterium bovis (strain BCG / Paris 1173P2)39241.31
    99% 
    MYCCTMycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)8110.30
    85% 
    MYCGAMycoplasma gallisepticum7260.29
    66% 
    MYCGEMycoplasma genitalium4830.18
    98% 
    MYCGIMycobacterium gilvum (strain PYR-GCK)54931.80
    92% 
    MYCH2Mycoplasma hyopneumoniae (strain 232)6820.27
    90% 
    MYCH7Mycoplasma hyopneumoniae (strain 7448)6570.26
    95% 
    MYCHJMycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)6590.26
    94% 
    MYCLBMycobacterium leprae (strain Br4923)26910.83
    99% 
    MYCLEMycobacterium leprae26990.83
    98% 
    MYCMMMycobacterium marinum (strain ATCC BAA-535 / M)54181.98
    91% 
    MYCMOMycoplasma mobile6330.23
    74% 
    MYCMSMycoplasma mycoides subsp. mycoides SC9750.32
    71% 
    MYCPAMycobacterium paratuberculosis43111.45
    95% 
    MYCPEMycoplasma penetrans10210.40
    53% 
    MYCPNMycoplasma pneumoniae6880.24
    72% 
    MYCPUMycoplasma pulmonis7740.29
    70% 
    MYCS2Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)65932.08
    86% 
    MYCS5Mycoplasma synoviae (strain 53)6690.24
    71% 
    MYCSJMycobacterium sp. (strain JLS)56951.86
    97% 
    MYCSKMycobacterium sp. (strain KMS)58891.90
    98% 
    MYCSSMycobacterium sp. (strain MCS)55861.82
    99% 
    MYCTAMycobacterium tuberculosis (strain ATCC 25177 / H37Ra)39911.33
    99% 
    MYCTFMycobacterium tuberculosis (strain F11)38551.30
    99% 
    MYCTUMycobacterium tuberculosis50151.65
    87% 
    MYCUAMycobacterium ulcerans (strain Agy99)41941.39
    90% 
    MYCVPMycobacterium vanbaalenii (strain DSM 7251 / PYR-1)59011.95
    92% 
    MYOLUMyotis lucifugus (Microbat)161297.54
    93% 
    MYXXDMyxococcus xanthus (strain DK 1622)72162.76
    63% 
    NANEQNanoarchaeum equitans5360.15
     46%
    NATPDNatronomonas pharaonis (strain DSM 2160 / ATCC 35678)28010.82
    77% 
    NATTJNatranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)28360.89
    74% 
    NEIG1Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)19430.55
    93% 
    NEIG2Neisseria gonorrhoeae (strain NCCP11945)25920.63
    73% 
    NEIM0Neisseria meningitidis serogroup C (strain 053442)19980.57
    92% 
    NEIMANeisseria meningitidis serogroup A19710.59
    95% 
    NEIMBNeisseria meningitidis19510.57
    91% 
    NEIMFNeisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)19390.59
    96% 
    NEMVENematostella vectensis (Sea anemone)260368.87
     47%
    NEOSMNeorickettsia sennetsu (strain Miyayama)9300.25
    57% 
    NITECNitrosomonas eutropha (strain C71)24700.77
    90% 
    NITEUNitrosomonas europaea24630.80
    91% 
    NITHXNitrobacter hamburgensis (strain X14 / DSM 10229)42261.29
    84% 
    NITMSNitrosopumilus maritimus (strain SCM1)17950.49
    71% 
    NITMUNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)27230.90
    85% 
    NITOCNitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)29440.98
    74% 
    NITSBNitratiruptor sp. (strain SB155-2)18570.59
    85% 
    NITWNNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)29560.92
    90% 
    NOCFANocardia farcinica59291.88
    77% 
    NOCSJNocardioides sp. (strain BAA-499 / JS614)48841.59
    74% 
    NOSP7Nostoc punctiforme (strain ATCC 29133 / PCC 73102)65722.29
    76% 
    NOVADNovosphingobium aromaticivorans (strain DSM 12444)39171.29
    84% 
    OCEIHOceanobacillus iheyensis34921.02
    83% 
    OCHA4Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)47571.50
    91% 
    OCHPROchotona princeps (Pika)157177.67
    94% 
    OENOBOenococcus oeni (strain BAA-331 / PSU-1)16820.49
    78% 
    ONYPEOnion yellows phytoplasma7040.20
    66% 
    OPITPOpitutus terrae (strain DSM 11246 / PB90-1)45881.75
    56% 
    ORITBOrientia tsutsugamushi (strain Boryong)18040.50
    56% 
    ORITIOrientia tsutsugamushi (strain Ikeda)16250.44
    67% 
    ORNANOrnithorhynchus anatinus (Platypus)197308.05
    77% 
    ORYLAOryzias latipes (Japanese medaka)2167610.77
    83% 
    ORYSAOryza sativa (Rice)2637610.60
    69% 
    OSTLUOstreococcus lucimarinus74102.99
     49%
    OTOGAOtolemur garnettii (Bushbaby)153837.01
    93% 
    PANTRPan troglodytes (Chimpanzee)2328311.04
    95% 
    PARD8Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)38311.44
    78% 
    PARDPParacoccus denitrificans (strain Pd 1222)50151.56
    84% 
    PARL1Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)35791.15
    87% 
    PARUWParachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.)20240.66
     48%
    PASMUPasteurella multocida20130.67
    93% 
    PEDPAPediococcus pentosaceus (strain ATCC 25745 / 183-1w)17550.54
    87% 
    PELCDPelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)33401.06
    80% 
    PELLDPelodictyon luteolum (strain DSM 273)20740.70
    92% 
    PELPBPelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)26850.85
    84% 
    PELPDPelobacter propionicus (strain DSM 2379)36911.20
    83% 
    PELTSPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)28780.85
    74% 
    PELUBPelagibacter ubique13530.42
    80% 
    PETMOPetrotoga mobilis (strain DSM 10674 / SJ95)18890.64
    79% 
    PHANOPhaeosphaeria nodorum164896.45
     45%
    PHEZHPhenylobacterium zucineum (strain HLK1)38371.28
    91% 
    PHOLLPhotorhabdus luminescens (subsp. laumondii)47521.54
    72% 
    PHOPRPhotobacterium profundum52221.66
    81% 
    PHYASPhytoplasma australiense7800.21
    57% 
    PHYMTPhytoplasma mali (strain AT)4620.15
    73% 
    PICSTPichia stipitis58002.85
    91% 
    PICTOPicrophilus torridus15350.47
    80% 
    PLAF7Plasmodium falciparum52864.01
     27%
    POLNAPolaromonas naphthalenivorans (strain CJ2)48731.56
    86% 
    POLNSPolynucleobacter necessarius (strain STIR1)15070.40
    78% 
    POLSJPolaromonas sp. (strain JS666 / ATCC BAA-500)54361.71
    86% 
    POLSQPolynucleobacter sp. (strain QLW-P1DMWA-1)20740.67
    92% 
    PONABPongo pygmaeus abelii (Orangutan)200899.95
    95% 
    POPTRPopulus trichocarpa (Western balsam poplar)4433814.80
    52% 
    PORG3Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)20210.66
    83% 
    PORGIPorphyromonas gingivalis18540.63
    88% 
    PRIPAPristionchus pacificus (Nematode)293638.48
     23%
    PROA2Prosthecochloris aestuarii (strain DSM 271 / SK 413)23190.75
    87% 
    PROACPropionibacterium acnes22920.76
    70% 
    PROCAProcavia capensis (Hyrax)159547.85
    95% 
    PROM0Prochlorococcus marinus (strain MIT 9301)19060.50
    91% 
    PROM1Prochlorococcus marinus (strain NATL1A)21730.54
    89% 
    PROM2Prochlorococcus marinus (strain MIT 9215)19830.52
    89% 
    PROM3Prochlorococcus marinus (strain MIT 9303)29830.76
    72% 
    PROM4Prochlorococcus marinus (strain MIT 9211)18540.50
    87% 
    PROM5Prochlorococcus marinus (strain MIT 9515)18990.50
    89% 
    PROM9Prochlorococcus marinus (strain MIT 9312)19590.51
    90% 
    PROMAProchlorococcus marinus18810.52
    88% 
    PROMHProteus mirabilis (strain HI4320)37361.16
    84% 
    PROMMProchlorococcus marinus (strain MIT 9313)22640.66
    89% 
    PROMPProchlorococcus marinus subsp. pastoris17110.49
    95% 
    PROMSProchlorococcus marinus (strain AS9601)19200.50
    91% 
    PROMTProchlorococcus marinus (strain NATL2A)21410.53
    90% 
    PROVIProsthecochloris vibrioformis (strain DSM 265)17500.59
    95% 
    PSE14Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)50541.66
    91% 
    PSEA6Pseudoalteromonas atlantica (strain T6c / BAA-1087)42711.49
    85% 
    PSEA7Pseudomonas aeruginosa (strain PA7)62461.95
    90% 
    PSEABPseudomonas aeruginosa (strain UCBPP-PA14)58861.94
    97% 
    PSEAEPseudomonas aeruginosa55511.86
    98% 
    PSEE4Pseudomonas entomophila (strain L48)51591.74
    92% 
    PSEF5Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)61352.09
    91% 
    PSEHTPseudoalteromonas haloplanktis (strain TAC 125)34791.12
    85% 
    PSEMYPseudomonas mendocina (strain ymp)45631.50
    93% 
    PSEP1Pseudomonas putida (strain F1 / ATCC 700007)52441.76
    96% 
    PSEPFPseudomonas fluorescens (strain PfO-1)57261.92
    91% 
    PSEPGPseudomonas putida (strain GB-1)53961.80
    94% 
    PSEPKPseudomonas putida (strain KT2440)53051.77
    93% 
    PSEPWPseudomonas putida (strain W619)51791.71
    94% 
    PSESMPseudomonas syringae (pv. tomato)54041.78
    89% 
    PSEU2Pseudomonas syringae pv. syringae (strain B728a)51161.78
    94% 
    PSEU5Pseudomonas stutzeri (strain A1501)40931.35
    89% 
    PSYA2Psychrobacter arcticus (strain DSM 17307 / 273-4)21250.71
    92% 
    PSYCKPsychrobacter cryohalolentis (strain K5)24510.84
    93% 
    PSYINPsychromonas ingrahamii (strain 37)35301.17
    83% 
    PSYWFPsychrobacter sp. (strain PRwf-1)23380.82
    87% 
    PTEVAPteropus vampyrus (Megabat)168819.06
    98% 
    PYRABPyrococcus abyssi17860.54
    95% 
    PYRAEPyrobaculum aerophilum25970.65
    80% 
    PYRARPyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)22950.61
    90% 
    PYRCJPyrobaculum calidifontis (strain JCM 11548 / VA1)21480.61
    90% 
    PYRFUPyrococcus furiosus20520.58
    86% 
    PYRHOPyrococcus horikoshii20770.57
    77% 
    PYRILPyrobaculum islandicum (strain DSM 4184 / JCM 9189)19760.53
    90% 
    PYRKOThermococcus kodakaraensis23000.64
    81% 
    RABITOryctolagus cuniculus (Rabbit)153177.37
    90% 
    RALEHRalstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)66132.16
    94% 
    RALEJRalstonia eutropha (strain JMP134)64272.11
    93% 
    RALMERalstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)61932.00
    90% 
    RALPJRalstonia pickettii (strain 12J)48861.54
    90% 
    RALSORalstonia solanacearum50091.66
    87% 
    RATNORattus norvegicus (Rat)2539112.06
    86% 
    RENSMRenibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)34200.93
    66% 
    RHIE6Rhizobium etli (strain CIAT 652)60981.86
    90% 
    RHIECRhizobium etli (strain CFN 42 / ATCC 51251)59641.87
    93% 
    RHIL3Rhizobium leguminosarum bv. viciae (strain 3841)72432.25
    90% 
    RHILORhizobium loti72472.17
    80% 
    RHIMERhizobium meliloti61191.89
    90% 
    RHOBARhodopirellula baltica72562.29
     29%
    RHOCSRhodospirillum centenum (strain ATCC 51521 / SW)40191.27
    78% 
    RHOFDRhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)43981.47
    89% 
    RHOP2Rhodopseudomonas palustris (strain HaA2)46801.55
    96% 
    RHOP5Rhodopseudomonas palustris (strain BisA53)48511.56
    91% 
    RHOPARhodopseudomonas palustris48231.59
    97% 
    RHOPBRhodopseudomonas palustris (strain BisB18)48621.56
    91% 
    RHOPSRhodopseudomonas palustris (strain BisB5)43881.41
    95% 
    RHOPTRhodopseudomonas palustris (strain TIE-1)52421.65
    94% 
    RHORTRhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)38361.29
    85% 
    RHOS1Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)41111.31
    95% 
    RHOS4Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)41221.30
    93% 
    RHOS5Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)41981.30
    89% 
    RHOSRRhodococcus sp. (strain RHA1)90652.87
    69% 
    RICAHRickettsia akari (strain Hartford)12550.31
    71% 
    RICB8Rickettsia bellii (strain OSU 85-389)14410.40
    88% 
    RICBRRickettsia bellii (strain RML369-C)13930.42
    93% 
    RICCKRickettsia canadensis (strain McKiel)10910.29
    74% 
    RICCNRickettsia conorii13740.34
    80% 
    RICFERickettsia felis14250.42
    81% 
    RICM5Rickettsia massiliae (strain Mtu5)9690.32
    95% 
    RICPRRickettsia prowazekii8340.28
    95% 
    RICRORickettsia rickettsii (strain Iowa)13840.32
    85% 
    RICRSRickettsia rickettsii (strain Sheila Smith)13450.32
    87% 
    RICTYRickettsia typhi8360.28
    96% 
    ROSCSRoseiflexus castenholzii (strain DSM 13941 / HLO8)43241.56
    91% 
    ROSDORoseobacter denitrificans (strain ATCC 33942 / OCh 114)39391.24
    87% 
    ROSS1Roseiflexus sp. (strain RS-1)44941.63
    88% 
    RUBXDRubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)31210.98
    65% 
    RUTMCRuthia magnifica subsp. Calyptogena magnifica9760.31
    94% 
    SACD2Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)39931.45
    76% 
    SACENSaccharopolyspora erythraea (strain NRRL 23338)71462.31
    74% 
    SALA4Salmonella agona (strain SL483)45931.37
    92% 
    SALAISalinispora arenicola (strain CNS-205)48471.64
    86% 
    SALARSalmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)44991.33
    86% 
    SALCHSalmonella enterica subsp. enterica serovar Choleraesuis str. SC-B6745811.36
    94% 
    SALDCSalmonella dublin (strain CT_02021853)46071.35
    92% 
    SALEPSalmonella enteritidis PT4 (strain P125109)43031.35
    98% 
    SALG2Salmonella gallinarum (strain 287/91 / NCTC 13346)42581.35
    98% 
    SALHSSalmonella heidelberg (strain SL476)47571.40
    92% 
    SALNSSalmonella newport (strain SL254)47871.42
    92% 
    SALPASalmonella paratyphi-a40761.25
    98% 
    SALPBSalmonella paratyphi B (strain ATCC BAA-1250 / SPB7)55591.44
    80% 
    SALPKSalmonella paratyphi A (strain AKU_12601)44901.38
    97% 
    SALRDSalinibacter ruber (strain DSM 13855)28111.01
    62% 
    SALSVSalmonella schwarzengrund (strain CVM19633)46031.36
    92% 
    SALTISalmonella typhi48811.48
    94% 
    SALTOSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)45221.52
    88% 
    SALTYSalmonella typhimurium44911.41
    98% 
    SCHPOSchizosaccharomyces pombe (Fission yeast)51582.35
    64% 
    SERP5Serratia proteamaculans (strain 568)49291.59
    91% 
    SHEAMShewanella amazonensis (strain ATCC BAA-1098 / SB2B)36381.26
    94% 
    SHEB2Shewanella baltica (strain OS223)43831.46
    95% 
    SHEB5Shewanella baltica (strain OS155 / ATCC BAA-1091)42181.39
    96% 
    SHEB8Shewanella baltica (strain OS185)43651.47
    97% 
    SHEB9Shewanella baltica (strain OS195)46161.53
    96% 
    SHEDOShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)37261.27
    88% 
    SHEFNShewanella frigidimarina (strain NCIMB 400)39891.35
    95% 
    SHEHHShewanella halifaxensis (strain HAW-EB4)42751.45
    95% 
    SHELPShewanella loihica (strain BAA-1088 / PV-4)38541.31
    95% 
    SHEONShewanella oneidensis45841.37
    84% 
    SHEPAShewanella pealeana (strain ANG-SQ1 / ATCC 700345)41791.42
    96% 
    SHEPCShewanella putrefaciens (strain CN-32 / ATCC BAA-453)39481.32
    98% 
    SHEPWShewanella piezotolerans (strain WP3 / JCM 13877)48951.51
    82% 
    SHESAShewanella sp. (strain ANA-3)43411.49
    96% 
    SHESHShewanella sediminis (strain HAW-EB3)44931.52
    91% 
    SHESMShewanella sp. (strain MR-4)39181.34
    98% 
    SHESRShewanella sp. (strain MR-7)40031.36
    98% 
    SHESWShewanella sp. (strain W3-18-1)40071.32
    97% 
    SHEWMShewanella woodyi (strain ATCC 51908 / MS32)48651.68
    90% 
    SHIB3Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)41211.15
    90% 
    SHIBSShigella boydii serotype 4 (strain Sb227)38261.15
    96% 
    SHIDSShigella dysenteriae serotype 1 (strain Sd197)37921.07
    88% 
    SHIF8Shigella flexneri serotype 5b (strain 8401)38491.18
    97% 
    SHIFLShigella flexneri42251.33
    93% 
    SHISSShigella sonnei (strain Ss046)39681.24
    97% 
    SILPOSilicibacter pomeroyi42311.37
    90% 
    SILSTSilicibacter sp. (strain TM1040)38451.22
    88% 
    SINMWSinorhizobium medicae (strain WSM419)61451.92
    91% 
    SODGMSodalis glossinidius (strain morsitans)24800.71
    81% 
    SOLUESolibacter usitatus (strain Ellin6076)77582.98
    53% 
    SORARSorex araneus (Common shrew)130995.86
    91% 
    SORBISorghum bicolor (Sorghum)3544712.81
    57% 
    SORC5Sorangium cellulosum (strain So ce56)93363.75
    54% 
    SPETRSpermophilus tridecemlineatus (Squirrel)147986.49
    91% 
    SPHALSphingopyxis alaskensis31811.01
    87% 
    SPHWWSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)53111.78
    81% 
    STAA1Staphylococcus aureus (strain Mu3 / ATCC 700698)26770.80
    98% 
    STAA2Staphylococcus aureus (strain JH1)27550.81
    97% 
    STAA3Staphylococcus aureus (strain USA300)25990.79
    98% 
    STAA8Staphylococcus aureus (strain NCTC 8325)28870.80
    90% 
    STAA9Staphylococcus aureus (strain JH9)27020.81
    98% 
    STAABStaphylococcus aureus (strain bovine RF122)25760.76
    95% 
    STAACStaphylococcus aureus (strain COL)26740.77
    93% 
    STAAEStaphylococcus aureus (strain Newman)25700.79
    97% 
    STAAMStaphylococcus aureus (strain Mu50 / ATCC 700699)27230.80
    97% 
    STAANStaphylococcus aureus (strain N315)25910.78
    98% 
    STAARStaphylococcus aureus (strain MRSA252)27170.80
    94% 
    STAASStaphylococcus aureus (strain MSSA476)26420.79
    96% 
    STAATStaphylococcus aureus (strain USA300 / TCH1516)26820.77
    93% 
    STAAWStaphylococcus aureus (strain MW2)26570.79
    96% 
    STAEQStaphylococcus epidermidis (strain ATCC 35984 / RP62A)24900.72
    87% 
    STAESStaphylococcus epidermidis (strain ATCC 12228)24390.70
    87% 
    STAHJStaphylococcus haemolyticus (strain JCSC1435)26040.75
    86% 
    STAMFStaphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)15700.45
    80% 
    STAS1Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)25070.71
    87% 
    STRA1Streptococcus agalactiae serotype Ia19780.61
    96% 
    STRA3Streptococcus agalactiae (serotype III)20340.62
    93% 
    STRA5Streptococcus agalactiae (serotype V)21020.62
    92% 
    STRAWStreptomyces avermitilis75592.58
    81% 
    STRCOStreptomyces coelicolor80862.64
    80% 
    STRE4Streptococcus equi subsp. equi (strain 4047)20430.62
    90% 
    STREMStreptococcus equi subsp. zooepidemicus (strain MGCS10565)18610.55
    88% 
    STRGCStreptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)20500.64
    89% 
    STRGGStreptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)70102.47
    83% 
    STRM5Stenotrophomonas maltophilia (strain R551-3)40261.36
    94% 
    STRMKStenotrophomonas maltophilia (strain K279a)44001.44
    89% 
    STRMUStreptococcus mutans19470.58
    85% 
    STRP1Streptococcus pyogenes serotype M122090.64
    91% 
    STRP2Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)19150.57
    97% 
    STRP3Streptococcus pyogenes (serotype M3)18520.54
    97% 
    STRP4Streptococcus pneumoniae serotype 19F (strain G54)20990.59
    90% 
    STRP6Streptococcus pyogenes (serotype M6)18740.55
    95% 
    STRP8Streptococcus pyogenes (serotype M18)18330.53
    96% 
    STRPBStreptococcus pyogenes serotype M12 (strain MGAS2096)18840.54
    90% 
    STRPCStreptococcus pyogenes serotype M12 (strain MGAS9429)18660.53
    94% 
    STRPDStreptococcus pyogenes serotype M2 (strain MGAS10270)19620.56
    94% 
    STRPFStreptococcus pyogenes serotype M4 (strain MGAS10750)19630.56
    93% 
    STRPGStreptococcus pyogenes serotype M5 (strain Manfredo)18090.53
    97% 
    STRPIStreptococcus pneumoniae (strain Hungary19A-6)21510.62
    91% 
    STRPMStreptococcus pyogenes serotype M2818860.55
    96% 
    STRPNStreptococcus pneumoniae20710.59
    90% 
    STRPSStreptococcus pneumoniae (strain CGSP14)21890.63
    91% 
    STRPZStreptococcus pyogenes serotype M49 (strain NZ131)17020.51
    96% 
    STRR6Streptococcus pneumoniae (strain ATCC BAA-255 / R6)20300.59
    95% 
    STRS2Streptococcus suis (strain 98HAH33)21780.61
    85% 
    STRSVStreptococcus sanguinis (strain SK36)22670.70
    87% 
    STRSYStreptococcus suis (strain 05ZYH33)21780.61
    85% 
    STRT1Streptococcus thermophilus (strain CNRZ 1066)18970.50
    93% 
    STRT2Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)18660.50
    93% 
    STRTDStreptococcus thermophilus (strain ATCC BAA-491 / LMD-9)17040.47
    88% 
    SULACSulfolobus acidocaldarius22150.63
    88% 
    SULDNSulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)20820.67
    85% 
    SULMWSulcia muelleri (strain GWSS)2270.08
    85% 
    SULNBSulfurovum sp. (strain NBC37-1)24600.77
    79% 
    SULSOSulfolobus solfataricus28850.82
    78% 
    SULSYSulfurihydrogenibium sp. (strain YO3AOP1)17120.52
    77% 
    SULTOSulfolobus tokodaii28120.76
    79% 
    SYMTHSymbiobacterium thermophilum32841.01
     48%
    SYNASSyntrophus aciditrophicus (strain SB)31380.93
    70% 
    SYNELSynechococcus elongatus24340.76
    99% 
    SYNFMSyntrophobacter fumaroxidans (strain DSM 10017 / MPOB)40101.35
    75% 
    SYNJASynechococcus sp. (strain JA-3-3Ab)27120.82
    87% 
    SYNJBSynechococcus sp. (strain JA-2-3B'a(2-13))28210.86
    86% 
    SYNP2Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)31790.99
    82% 
    SYNP6Synechococcus sp. (strain PCC 6301)25210.78
    84% 
    SYNPWSynechococcus sp. (strain WH7803)25300.73
    89% 
    SYNPXSynechococcus25210.73
    86% 
    SYNR3Synechococcus sp. (strain RCC307)25320.70
    80% 
    SYNS3Synechococcus sp. (strain CC9311)28810.75
    77% 
    SYNS9Synechococcus sp. (strain CC9902)23010.66
    93% 
    SYNSCSynechococcus sp. (strain CC9605)26310.72
    84% 
    SYNWWSyntrophomonas wolfei subsp. wolfei (strain Goettingen)24710.79
    75% 
    SYNY3Synechocystis sp.34871.12
    81% 
    TAEGUTaeniopygia guttata (Zebra finch)167807.75
    ---
    TARSYTarsius syrichta (Tarsier)135006.41
    93% 
    TETNGTetraodon nigroviridis (Green puffer)2746311.24
    61% 
    THEACThermoplasma acidophilum14800.45
    91% 
    THEEBThermosynechococcus elongatus (strain BP-1)24470.77
    99% 
    THEFYThermobifida fusca (strain YX)31081.03
    79% 
    THELTThermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)20400.67
    86% 
    THEM4Thermosipho melanesiensis (strain BI429 / DSM 12029)18770.58
    83% 
    THEMAThermotoga maritima18440.58
    95% 
    THENVThermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)19650.53
    94% 
    THEONThermococcus onnurineus (strain NA1)19760.56
    88% 
    THEP1Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)17830.57
    97% 
    THEP3Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)21920.66
    94% 
    THEPDThermofilum pendens (strain Hrk 5)18760.54
    66% 
    THEPXThermoanaerobacter sp. (strain X514)23220.70
    95% 
    THERPThermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)28580.87
    60% 
    THESQThermotoga sp. (strain RQ2)18180.59
    98% 
    THET2Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)21900.66
    93% 
    THET8Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)22270.66
    90% 
    THETNThermoanaerobacter tengcongensis25330.76
    84% 
    THEVOThermoplasma volcanium14990.45
    89% 
    THICRThiomicrospira crunogena (strain XCL-2)21830.72
    79% 
    THIDAThiobacillus denitrificans (strain ATCC 25259)28260.89
    86% 
    TREDETreponema denticola27520.86
    56% 
    TREPATreponema pallidum10350.35
    96% 
    TREPSTreponema pallidum subsp. pallidum (strain SS14)10280.35
    96% 
    TRIEITrichodesmium erythraeum (strain IMS101)43271.52
    65% 
    TROW8Tropheryma whipplei (strain TW08/27) (Whipple's bacillus)7800.26
    95% 
    TROWTTropheryma whipplei (strain Twist) (Whipple's bacillus)8050.26
    92% 
    TRYBBTrypanosoma brucei67853.38
    53% 
    TUPGBTupaia belangeri (Tree shrew)153736.81
    91% 
    TURTRTursiops truncatus (Dolphin)164458.98
    98% 
    UNCMAUncultured methanogenic archaeon RC-I30690.89
    59% 
    UNCTGUncultured termite group 1 bacterium phylotype Rs-D177670.25
    84% 
    UREP2Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)6090.23
    99% 
    UREPAUreaplasma parvum6140.23
    97% 
    UREU1Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)6460.26
    89% 
    USTMAUstilago maydis65103.99
     48%
    VEREIVerminephrobacter eiseniae (strain EF01-2)49091.65
    83% 
    VESOHVesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)9380.29
    94% 
    VIBC3Vibrio cholerae (strain ATCC 39541 / O395)37721.19
    92% 
    VIBCHVibrio cholerae37821.16
    89% 
    VIBF1Vibrio fischeri (strain ATCC 700601 / ES114)37891.23
    93% 
    VIBFMVibrio fischeri (strain MJ11)40341.30
    90% 
    VIBHBVibrio harveyi (strain ATCC BAA-1116 / BB120)55681.61
    77% 
    VIBPAVibrio parahaemolyticus48131.49
    87% 
    VIBVUVibrio vulnificus44631.44
    91% 
    VIBVYVibrio vulnificus (strain YJ016)49871.55
    85% 
    VITVIVitis vinifera (Grape)211427.96
    66% 
    WIGBRWigglesworthia glossinidia brevipalpis6110.20
    94% 
    WOLPMWolbachia pipientis wMel11590.33
    77% 
    WOLPPWolbachia pipientis subsp. Culex pipiens (strain wPip)12380.40
    77% 
    WOLSUWolinella succinogenes20240.65
    86% 
    WOLTRWolbachia sp. (subsp. Brugia malayi) (strain TRS)8040.24
    82% 
    XANACXanthomonas axonopodis (pv. citri)43471.49
    90% 
    XANC5Xanthomonas campestris pv. vesicatoria (strain 85-10)46211.55
    87% 
    XANC8Xanthomonas campestris pv. campestris (strain 8004)42131.44
    97% 
    XANCBXanthomonas campestris pv. campestris (strain B100)44521.47
    91% 
    XANCPXanthomonas campestris41071.41
    98% 
    XANOMXanthomonas oryzae pv. oryzae (strain MAFF 311018)40361.30
    94% 
    XANOPXanthomonas oryzae pv. oryzae (strain PXO99A)45591.32
    82% 
    XANORXanthomonas oryzae (pv. oryzae)41521.37
    87% 
    XANP2Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)49691.62
    88% 
    XENTRXenopus tropicalis (Western clawed frog)209369.70
    78% 
    XYLF2Xylella fastidiosa (strain M23)21570.67
    93% 
    XYLFAXylella fastidiosa27730.74
    76% 
    XYLFMXylella fastidiosa (strain M12)20530.63
    92% 
    XYLFTXylella fastidiosa (strain Temecula1 / ATCC 700964)19930.64
    98% 
    YARLIYarrowia lipolytica66033.14
    61% 
    YEASTSaccharomyces cerevisiae (Baker's yeast)56952.83
    84% 
    YERE8Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)41061.31
    93% 
    YERP3Yersinia pseudotuberculosis (serotype O:1b / strain IP 31758)43031.36
    90% 
    YERPAYersinia pestis (biovar Antiqua strain Antiqua)41291.30
    97% 
    YERPBYersinia pseudotuberculosis serotype IB (strain PB1/+)42131.32
    95% 
    YERPEYersinia pestis39971.29
    97% 
    YERPGYersinia pestis bv. Antiqua (strain Angola)38171.14
    91% 
    YERPNYersinia pestis (biovar Antiqua strain Nepal516)39371.25
    98% 
    YERPPYersinia pestis (strain Pestoides F)39371.26
    98% 
    YERPSYersinia pseudotuberculosis40841.34
    97% 
    YERPYYersinia pseudotuberculosis serotype O:3 (strain YPIII)41691.30
    93% 
    ZYMMOZymomonas mobilis20290.60
    72% 

    Last update: Sat Jul 4 17:06:13 2009
    Last change: Thu Jul 2 21:06:45 2009 (Firmicutes Tree)
    Program to produce page by Adrian Schneider