Status of the OMA Orthologs Project

This page displays the current status of the orthologs project that is currently under way in the Computational Biochemistry Research Group (CBRG) of the ETH Zürich and is automatically updated every hour. There are several other webpages related to the OMA project:
  • The project homepage
  • A webpage describing algorithm.
  • A webpage with timing statistics of the over 300 CPUs used.
  • A page with facts and figures about the over 5 billion alignments collected so far.
  • All trees are downloadable in the Newick tree format and you can explore the trees using the ATV tree viewer applet.
  • The OMA groups can be explored with the OMA Browser which can be found under omabrowser.org.


    • The latest matrices contain 1211 species: (go to list)

    1109 Species
    May 10
    446900 orthologous groups
    7.6 proteins per group
    93 Archaea
    Dec 12
    25553 orthologous groups
    6.8 proteins per group     		994 Bacteria
    Jan 19
    259344 orthologous groups
    9.3 proteins per group     		124 Eukaryota
    Dec 22
    258439 orthologous groups
    5.8 proteins per group
    224 Gammaproteobacteria
    Dec 19
    55894 orthologous groups
    13.4 proteins per group     		236 other Proteobacteria
    Mar 08
    89463 orthologous groups
    8.6 proteins per group     		79 Metazoa
    Jan 07
    163698 orthologous groups
    6.9 proteins per group
    177 Firmicutes
    Oct 27
    45611 orthologous groups
    10.1 proteins per group     		35 Cyanobacteria
    Apr 08
    13906 orthologous groups
    6.7 proteins per group     		39 Mammalia
    Dec 23
    61714 orthologous groups
    10.1 proteins per group
    85 Actinobacteria
    Dec 16
    42935 orthologous groups
    6.8 proteins per group     		144 other Bacteria
    Dec 21
    42857 orthologous groups
    5.8 proteins per group     		45 other Eukaryota
    Jan 12
    92647 orthologous groups
    3.9 proteins per group

    Currently in the all-against-all

    CAMJC - Campylobacter jejuni subsp. jejuni serotype HS:41 (strain ICDCCJ07001) (finished)
    [Proteobacteria - Epsilonproteobacteria]
    VARPE - Variovorax paradoxus (strain EPS) (38% completed)
    [Proteobacteria - Betaproteobacteria]

    Recently added to the matrices

    Nov 06: NOMLE - Nomascus leucogenys (Northern white-cheeked gibbon) [Metazoa - Eumetazoa]
    Oct 17: ROTDC - Rothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA) [Actinobacteria - Actinobacteridae]
    Oct 17: HELP3 - Helicobacter pylori (strain B8) [Proteobacteria - Epsilonproteobacteria]

    Finished all-all, but missing in matrices

    130 Species
    2 Archaea: METSL, SULIH
    21 Bacteria
    25 Gammaproteobacteria
    23 Firmicutes
    4 Cyanobacteria: CYAP2, CYAP8, NOSA0, NOSS1
    16 Actinobacteria
    2 Eukaryota: ATTCE, GADMO
    2 Metazoa: ATTCE, GADMO
    19 other Bacteria
    31 other Proteobacteria

    The Latest Trees

    Species trees can be constructed by several methods. We found that best trees according to biological classifications are the PAM distance trees, where the distances are determined by the average PAM distance between every pair of species. The optimal set of OMA groups from which the distance averages are calculated is based on the "dimensionless fitting index". This is a normalized measure of how well a set of distance estimates can be fit on a tree.

    Tree of Archaea

    Tree info: All Archaeal genomes, Mon Dec 12 17:36:17 2011, 93 species, 25553 orthologs, 33 top groups, 123 used here, Weighted, BestSubset
    DimlessQual: best: 0.8214, ave: 0.9904 +- 0.0051, var: 0.006658, Z=-2.072
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Archaea
    Color code:
    Crenarchaeota
    Methanomicrobia
    Halobacteria
    Methanococcaceae
    Thermococci
    Methanocaldococcaceae
    Methanobacteria
    Archaeoglobi
    Thermoplasmata
    Aciduliprofundum
    Methanopyri
    environmental samples
    Korarchaeota
    Nanoarchaeota


    Recently added:
    Oct 12: METMI - Methanococcus maripaludis
    Jun 30: METP4 - Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847)
    Jun 15: VULDI - Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)

    Tree of Bacteria

    Tree info: All Bacterial genomes, Wed Jun 27 01:46:01 2007, 340 species, 114863 orthologs, 943 used here, Arithmetic, BestDimless
    DimlessQual: best: 4.3995, ave: 4.997 +- 0.011, var: 0.03114, Z=-3.386
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Bacteria
    Color code:
    Proteobacteria
    Firmicutes
    Actinobacteria
    Cyanobacteria
    Spirochaetes
    Bacteroidetes
    Chlamydiae
    Chlorobi
    Deinococcus-Thermus
    Acidobacteria
    Chloroflexi
    Aquificae
    Fusobacteria
    Planctomycetes
    Thermotogales
    Eukaryota


    Recently added:
    Jun 18: YERPN - Yersinia pestis (biovar Antiqua strain Nepal516)
    Jun 17: VEREI - Verminephrobacter eiseniae (strain EF01-2)
    Jun 03: DESDG - Desulfovibrio desulfuricans (strain G20)

    Tree of Gammaproteobacteria

    Tree info: All Gammaproteobacteria (max Length) (only 1 isoform used) , Sun Dec 19 08:41:07 2010, 224 species, 55894 orthologs, 52 top groups, 277 used here, AveVarWeighted, BestSubset
    DimlessQual: best: 0.13535, ave: 0.15494 +- 0.00078, var: 0.0001566, Z=-1.566
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Gammaproteobacteria
    Color code:
    Enterobacteriales
    Alteromonadales
    Pseudomonas
    Pasteurellales
    Xanthomonadales
    Vibrionales
    Francisellaceae
    Moraxellaceae
    Legionellales
    Chromatiales
    Oceanospirillales
    Acidithiobacillales
    Aeromonadales
    sulfur-oxidizing symbionts
    Piscirickettsiaceae
    Azotobacter
    Cellvibrio
    Baumannia
    Cardiobacteriales
    Methylococcales


    Recently added:
    Dec 11: LEGLN - Legionella longbeachae serogroup 1 (strain NSW150)
    Oct 13: ECOD1 - Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)
    Oct 11: CITRI - Citrobacter rodentium (strain ICC168)

    Tree of other Proteobacteria

    Tree info: Other Proteobacteria (max Length) (only 1 isoform used) , Tue Mar 8 06:10:21 2011, 236 species, 89463 orthologs, 156 top groups, 451 used here, AveVarWeighted, BestSubset
    DimlessQual: best: 0.41814, ave: 0.5786 +- 0.0025, var: 0.001664, Z=-3.934
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of other Proteobacteria
    Color code:
    Rhizobiales
    Burkholderiales
    Deltaproteobacteria
    Epsilonproteobacteria
    Rickettsia
    Rhodobacterales
    Neisseriales
    Anaplasmataceae
    Rhodospirillales
    Sphingomonadales
    Wolbachieae
    Rhodocyclales
    Caulobacterales
    Methylophilales
    Nitrosomonadales
    Orientia
    SAR11 cluster
    Hydrogenophilales
    SAR116 cluster
    Magnetococcus


    Recently added:
    Dec 06: NEIML - Neisseria meningitidis (strain alpha14)
    Oct 09: PUNMI - Puniceispirillum marinum (strain IMCC1322)
    Oct 09: METML - Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540)

    Tree of Firmicutes

    Tree info: All Firmicutes (max Length) (only 1 isoform used) , Wed Oct 27 09:21:52 2010, 177 species, 45611 orthologs, 59 top groups, 228 used here, Weighted, BestSubset
    DimlessQual: best: 0.26287, ave: 0.3001 +- 0.0010, var: 0.0002853, Z=-2.203
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Firmicutes
    Color code:
    Streptococcus
    Clostridiales
    Bacillaceae
    Staphylococcaceae
    Lactobacillus
    Listeriaceae
    Thermoanaerobacterales
    Lactococcus
    Bacillales Family XII. Incertae Sedis
    Paenibacillaceae
    Leuconostoc
    Pediococcus
    Halanaerobiales
    Natranaerobiales
    Alicyclobacillaceae
    Macrococcus
    Enterococcaceae
    Oenococcus


    Recently added:
    Oct 09: LACRL - Lactobacillus rhamnosus (strain Lc 705)
    Aug 16: STRG3 - Streptococcus gallolyticus (strain UCN34)
    Aug 12: STRS4 - Streptococcus suis (strain BM407)

    Tree of Cyanobacteria

    Tree info: All Cyanobacteria (max Length) (only 1 isoform used) , Fri Apr 8 21:02:57 2011, 35 species, 13907 orthologs, 1 top groups, 214 used here, Weighted, BestSubset
    DimlessQual: best: 2.0568, ave: 2.2029 +- 0.0086, var: 0.01915, Z=-1.056
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Cyanobacteria
    Color code:
    Chroococcales
    Prochlorales
    Nostocales
    Acaryochloris
    Oscillatoriales


    Recently added:
    Sep 10: CYAP7 - Cyanothece sp. (strain PCC 7424)
    Dec 03: CYAP0 - Cyanothece sp. (strain PCC 8802)
    Jun 14: CYAP4 - Cyanothece sp. (strain PCC 7425 / ATCC 29141)

    Tree of Actinobacteria

    Tree info: All Actinobacteria (max Length) (only 1 isoform used) , Thu Dec 16 03:44:52 2010, 85 species, 42935 orthologs, 20 top groups, 214 used here, Weighted, BestSubset
    DimlessQual: best: 0.66372, ave: 0.7152 +- 0.0021, var: 0.001103, Z=-1.549
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Actinobacteria
    Color code:
    Actinomycetales
    Bifidobacterium
    Coriobacteridae
    Gardnerella
    Acidimicrobidae
    Rubrobacteridae


    Recently added:
    Dec 10: CORPF - Corynebacterium pseudotuberculosis (strain FRC41)
    Dec 10: BIFAV - Bifidobacterium animalis subsp. lactis (strain V9)
    Nov 28: MYCBT - Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)

    Tree of other Bacteria

    Tree info: Other Bacteria (max Length) (only 1 isoform used) , Tue Dec 21 17:52:38 2010, 144 species, 42857 orthologs, 96 top groups, 208 used here, AveVarWeighted, BestSubset
    DimlessQual: best: 1.3648, ave: 2.441 +- 0.073, var: 1.403, Z=-0.9087
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of other Bacteria
    Color code:
    Bacteria


    Recently added:
    Dec 08: SPHTD - Sphaerobacter thermophilus (strain DSM 20745 / S 6022)
    Dec 06: AMICL - Aminobacterium colombiense (strain DSM 12261 / ALA-1)
    Dec 06: DEFDS - Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1)

    Tree of Eukaryota

    Tree info: All Eukaryotal genomes, Thu Dec 22 16:38:15 2011, 124 species, 258439 orthologs, 77 top groups, 1316 used here, Arithmetic, BestSubset
    DimlessQual: best: 0.045328, ave: 0.06715 +- 0.00015, var: 5.889e-06, Z=-8.993
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Eukaryota
    Color code:
    Chordata
    Dikarya
    Protostomia
    Viridiplantae
    Pseudocoelomata
    Euglenozoa
    Alveolata
    Microsporidia
    Echinodermata
    Acoelomata
    Cnidaria
    Placozoa
    Amoebozoa
    Choanoflagellida
    Cryptophyta
    Fornicata
    Haptophyceae


    Recently added:
    Nov 06: NOMLE - Nomascus leucogenys (Northern white-cheeked gibbon)
    Oct 15: SARHA - Sarcophilus harrisii (Tasmanian devil)
    Oct 07: STRPU - Strongylocentrotus purpuratus (Purple sea urchin)

    Tree of Metazoa

    Tree info: All Metazoa (max Length) (only 1 isoform used) (VPs consistent per genome-pair) , Sat Jan 7 16:03:00 2012, 79 species, 163698 orthologs, 26 top groups, 850 used here, Arithmetic, BestSubset
    DimlessQual: best: 0.032241, ave: 0.04851 +- 0.00015, var: 5.783e-06, Z=-6.767
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Metazoa
    Color code:
    Theria
    Protostomia
    Pseudocoelomata
    Actinopterygii
    Sauropsida
    Tunicata
    Prototheria
    Amphibia
    Cephalochordata
    Echinodermata
    Acoelomata
    Cnidaria
    Placozoa


    Recently added:
    Nov 06: NOMLE - Nomascus leucogenys (Northern white-cheeked gibbon)
    Oct 15: SARHA - Sarcophilus harrisii (Tasmanian devil)
    Oct 07: STRPU - Strongylocentrotus purpuratus (Purple sea urchin)

    Tree of Mammalia

    Tree info: All Mammalia (max Length) (only 1 isoform used) (VPs consistent per genome-pair) , Fri Dec 23 22:20:39 2011, 39 species, 61714 orthologs, 4 top groups, 479 used here, AveVarWeighted, BestSubset
    DimlessQual: best: 0.27374, ave: 0.4133 +- 0.0021, var: 0.001156, Z=-4.102
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of Mammalia
    Color code:
    Laurasiatheria
    Haplorrhini
    Glires
    Afrotheria
    Metatheria
    Strepsirrhini
    Xenarthra
    Scandentia
    Prototheria


    Recently added:
    Nov 06: Northern white-cheeked gibbon - Nomascus leucogenys
    Oct 15: Tasmanian devil - Sarcophilus harrisii
    Dec 27: Giant panda - Ailuropoda melanoleuca

    Tree of other Eukaryota

    Tree info: Eukaryota excluding Metazoa (max Length) (only 1 isoform used) (VPs consistent per genome-pair) , Thu Jan 12 17:12:11 2012, 45 species, 92647 orthologs, 24 top groups, 489 used here, Arithmetic, BestSubset
    DimlessQual: best: 0.44355, ave: 0.8184 +- 0.0036, var: 0.003351, Z=-6.475
    Downloads: Unrooted tree (pdf), phylogram (pdf), Newick tree file, PhyloXML tree file or a Darwin script to plot your own tree.
    Tree of other Eukaryota
    Color code:
    Fungi
    Viridiplantae
    Euglenozoa
    Alveolata
    Amoebozoa
    Choanoflagellida
    Fornicata
    Haptophyceae
    Metazoa


    Recently added:
    Aug 15: CHLRE - Chlamydomonas reinhardtii
    May 27: MAIZE - Zea mays (Maize)
    Apr 14: PUCGT - Puccinia graminis f. sp. tritici (Black rust)

    List of Species

    Click on a 5-letter code for more information about a particular species
    "Maa" stands for "million amino acids" and "Coverage" indicates the percentage of sequences which form part of some orthologous group.
    Scientific Name# Seqs Maa Coverage
    ACAM1Acaryochloris marina (strain MBIC 11017)81482.25
     50%
    ACEP3Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)28850.94
    81% 
    ACHLIAcholeplasma laidlawii (strain PG-8A)13800.45
    63% 
    ACIACAcidovorax avenae subsp. citrulli (strain AAC00-1)46011.56
    84% 
    ACIADAcinetobacter sp. (strain ADP1)33071.05
    87% 
    ACIB3Acinetobacter baumannii (strain AB307-0294)34521.08
    95% 
    ACIB4Aciduliprofundum boonei (strain DSM 19572 / T469)15390.47
    70% 
    ACIB5Acinetobacter baumannii (strain AB0057)37321.14
    94% 
    ACIBCAcinetobacter baumannii (strain ACICU)37431.15
    92% 
    ACIBLAcidobacteria bacterium (strain Ellin345)47701.68
    69% 
    ACIBSAcinetobacter baumannii (strain SDF)32870.94
    80% 
    ACIBTAcinetobacter baumannii (strain ATCC 17978 / NCDC KC 755)33640.95
    84% 
    ACIBYAcinetobacter baumannii (strain AYE)37151.16
    95% 
    ACIC1Acidothermus cellulolyticus (strain ATCC 43068 / 11B)21570.73
    86% 
    ACIC5Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)33631.18
    72% 
    ACICJAcidiphilium cryptum (strain JF-5)35181.17
    82% 
    ACIETAcidovorax ebreus (strain TPSY)34601.12
    96% 
    ACIF2Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)31190.88
    80% 
    ACIF5Acidithiobacillus ferrooxidans (strain ATCC 53993)27450.83
    90% 
    ACIFDAcidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP)19350.63
    67% 
    ACIFVAcidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4)20150.67
    0%
    ACIS3Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15)14990.45
    78% 
    ACISJAcidovorax sp. (strain JS42)40421.30
    94% 
    ACTMDActinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971)69112.39
    77% 
    ACTP2Actinobacillus pleuropneumoniae serotype 5b (strain L20)20020.65
    98% 
    ACTP7Actinobacillus pleuropneumoniae serotype 7 (strain AP76)21090.67
    96% 
    ACTPJActinobacillus pleuropneumoniae serotype 3 (strain JL03)20240.64
    97% 
    ACTSZActinobacillus succinogenes (strain ATCC 55618 / 130Z)20770.68
    96% 
    ACYPIAcyrthosiphon pisum (Pea aphid)3399210.59
     26%
    AEDAEAedes aegypti (Yellow fever mosquito)151297.11
    80% 
    AERHHAeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)41201.38
    94% 
    AERPEAeropyrum pernix16990.49
    74% 
    AERS4Aeromonas salmonicida (strain A449)43021.34
    91% 
    AGABIAgaricus bisporus (Common mushroom)103664.43
    61% 
    AGGADAggregatibacter actinomycetemcomitans serotype C (strain D11S-1)21260.61
    85% 
    AGGANAggregatibacter aphrophilus (strain NJ8700)22240.66
    84% 
    AGRRKAgrobacterium radiobacter (strain K84 / ATCC BAA-868)66752.11
    89% 
    AGRT5Agrobacterium tumefaciens (strain C58 / ATCC 33970)53471.66
    88% 
    AGRVSAgrobacterium vitis (strain S4 / ATCC BAA-846)53521.78
    89% 
    AILMEAiluropoda melanoleuca (Giant panda)1980410.45
    93% 
    AKKM8Akkermansia muciniphila (strain ATCC BAA-835)21370.77
    61% 
    ALCBSAlcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573)27520.91
    86% 
    ALHEHAlkalilimnicola ehrlichei (strain MLHE-1)28620.98
    85% 
    ALIADAlicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A)30590.93
    65% 
    ALISLAliivibrio salmonicida (strain LFI1238)37961.22
    91% 
    ALKMQAlkaliphilus metalliredigens (strain QYMF)44631.32
    78% 
    ALKOOAlkaliphilus oremlandii (strain OhILAs)28280.87
    88% 
    ALTMDAlteromonas macleodii (strain DSM 17117 / Deep ecotype)40461.26
    76% 
    AMICLAminobacterium colombiense (strain DSM 12261 / ALA-1)18720.60
    79% 
    AMOA5Amoebophilus asiaticus (strain 5a2)12410.47
    56% 
    ANAD2Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)44601.50
    95% 
    ANADEAnaeromyxobacter dehalogenans (strain 2CP-C)43441.52
    95% 
    ANADFAnaeromyxobacter sp. (strain Fw109-5)44611.58
    85% 
    ANAMMAnaplasma marginale (strain St. Maries)9400.34
    79% 
    ANAPDAnaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1)17950.59
    79% 
    ANAPZAnaplasma phagocytophilum (strain HZ)12340.33
    58% 
    ANASKAnaeromyxobacter sp. (strain K)44441.52
    96% 
    ANATDAnaerocellum thermophilum (strain DSM 6725 / Z-1320)26480.83
    83% 
    ANAVTAnabaena variabilis (strain ATCC 29413 / PCC 7937)56241.91
    90% 
    ANOCAAnolis carolinensis (Anole lizard)180179.18
    87% 
    ANOFWAnoxybacillus flavithermus (strain DSM 21510 / WK1)28170.83
    0%
    ANOGAAnopheles gambiae (African malaria mosquito)124995.95
    79% 
    APIMEApis mellifera (Honeybee)109353.31
    54% 
    AQUAEAquifex aeolicus15520.49
    81% 
    ARALYArabidopsis lyrata (Lyre-leaved rock-cress)3208511.69
    73% 
    ARATHArabidopsis thaliana (Thale cress / Mouse-ear cress)2649611.02
    87% 
    ARCB4Arcobacter butzleri (strain RM4018)22540.72
    81% 
    ARCFUArchaeoglobus fulgidus24000.66
    77% 
    ARCHDArcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018)17170.57
    0%
    ARCPAArchaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18)18180.48
    74% 
    AROAEAromatoleum aromaticum (strain EbN1)44831.39
    77% 
    ARTATArthrobacter aurescens (strain TC1)45611.51
    86% 
    ARTCAArthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)45861.47
    83% 
    ARTS2Arthrobacter sp. (strain FB24)44531.49
    90% 
    ASHGOAshbya gossypii (Yeast)47072.31
    87% 
    ASPFUAspergillus fumigatus98324.76
    77% 
    ATOPDAtopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)13530.46
    0%
    AYWBPAster yellows witches'-broom phytoplasma (strain AYWB)6810.18
    70% 
    AZOC5Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)47061.60
    90% 
    AZOPCAzobacteroides pseudotrichonymphae genomovar. CFP28470.29
    82% 
    AZOSBAzoarcus sp. (strain BH72)39801.33
    91% 
    AZOVDAzotobacter vinelandii (strain DJ / ATCC BAA-1303)49851.52
    78% 
    BACA2Bacillus amyloliquefaciens (strain FZB42)36911.15
    93% 
    BACAABacillus anthracis (strain A0248)52911.42
    0%
    BACACBacillus anthracis (strain CDC 684 / NRRL 3495)58941.53
    90% 
    BACAHBacillus thuringiensis (strain Al Hakam)47921.46
    98% 
    BACANBacillus anthracis54881.44
    94% 
    BACC0Bacillus cereus (strain AH820)57981.56
    91% 
    BACC1Bacillus cereus (strain ATCC 10987)55931.48
    88% 
    BACC2Bacillus cereus (strain G9842)58441.59
    87% 
    BACC3Bacillus cereus (strain 03BB102)55961.51
    93% 
    BACC4Bacillus cereus (strain B4264)53941.51
    93% 
    BACC7Bacillus cereus (strain AH187)57571.55
    91% 
    BACCNBacillus cereus subsp. cytotoxis (strain NVH 391-98)38391.08
    91% 
    BACCQBacillus cereus (strain Q1)54581.52
    93% 
    BACCRBacillus cereus (strain ATCC 14579 / DSM 31)52401.45
    94% 
    BACCZBacillus cereus (strain ZK)51331.48
    98% 
    BACFNBacteroides fragilis (strain ATCC 25285 / NCTC 9343)43021.55
    89% 
    BACFRBacteroides fragilis46091.59
    84% 
    BACHDBacillus halodurans40021.17
    84% 
    BACHKBacillus thuringiensis subsp. konkukian51671.47
    97% 
    BACLDBacillus licheniformis (strain DSM 13 / ATCC 14580)41351.20
    90% 
    BACP2Bacillus pumilus (strain SAFR-032)36741.07
    89% 
    BACSKBacillus clausii (strain KSM-K16)41021.23
    87% 
    BACSUBacillus subtilis41041.22
    90% 
    BACTNBacteroides thetaiotaomicron47711.86
    76% 
    BACV8Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)39801.49
    79% 
    BACWKBacillus weihenstephanensis (strain KBAB4)56501.59
    92% 
    BARBKBartonella bacilliformis (strain ATCC 35685 / KC583)12510.38
    84% 
    BARGABartonella grahamii (strain as4aup)17050.56
    92% 
    BARHEBartonella henselae15770.48
    86% 
    BARQUBartonella quintana13010.41
    87% 
    BART1Bartonella tribocorum (strain CIP 105476 / IBS 506)19520.60
    84% 
    BAUCHBaumannia cicadellinicola (subsp. Homalodisca coagulata)5950.19
    97% 
    BDEBABdellovibrio bacteriovorus35831.17
     48%
    BEII9Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)37741.21
    84% 
    BEUC1Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)41951.43
    83% 
    BIFA0Bifidobacterium animalis subsp. lactis (strain AD011)15250.54
    97% 
    BIFAABifidobacterium adolescentis (strain ATCC 15703 / DSM 20083)16270.60
    85% 
    BIFABBifidobacterium animalis subsp. lactis (strain BB-12)16400.58
    89% 
    BIFASBifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314)15650.55
    0%
    BIFAVBifidobacterium animalis subsp. lactis (strain V9)15690.55
    98% 
    BIFBSBifidobacterium bifidum (strain S17)17830.62
    0%
    BIFDBBifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1)21190.75
    79% 
    BIFLBBifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219)15660.55
    98% 
    BIFLDBifidobacterium longum (strain DJO10A)19770.68
    84% 
    BIFLJBifidobacterium longum subsp. longum (strain JDM301)19440.70
    0%
    BIFLOBifidobacterium longum17230.64
    90% 
    BLASBBlattabacterium sp. subsp. Blattella germanica (strain Bge)5870.20
    91% 
    BLASPBlattabacterium sp. subsp. Periplaneta americana (strain BPLAN)5820.20
    0%
    BLOFLBlochmannia floridanus5890.20
    96% 
    BLOPBBlochmannia pennsylvanicus (strain BPEN)6100.20
    98% 
    BOMMOBombyx mori (Silkworm)145775.94
     50%
    BORA1Bordetella avium (strain 197N)34061.12
    89% 
    BORAPBorrelia afzelii (strain PKo)12610.36
    84% 
    BORBRBordetella bronchiseptica49721.63
    96% 
    BORBUBorrelia burgdorferi15560.42
    78% 
    BORBZBorrelia burgdorferi (strain ZS7)12230.37
    94% 
    BORDLBorrelia duttonii (strain Ly)12850.42
    87% 
    BORGABorrelia garinii12680.36
    82% 
    BORHDBorrelia hermsii (strain DAH)8190.29
    99% 
    BORPABordetella parapertussis43691.45
    99% 
    BORPDBordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)49311.57
    90% 
    BORPEBordetella pertussis35871.18
    96% 
    BORRABorrelia recurrentis (strain A1)9770.33
    98% 
    BORT9Borrelia turicatae (strain 91E135)8180.29
    100% 
    BOTFBBotrytis cinerea162995.47
     40%
    BOVINBos taurus (Cow)2029710.85
    94% 
    BRAFDBrachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860)30621.07
    83% 
    BRAFLBranchiostoma floridae (Lancelet)2846413.24
     50%
    BRAHWBrachyspira hyodysenteriae (strain ATCC 49526 / WA1)26420.88
    56% 
    BRAJABradyrhizobium japonicum82512.62
    81% 
    BRASBBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)75612.40
    90% 
    BRASOBradyrhizobium sp. (strain ORS278)67342.12
    90% 
    BREBNBrevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)58871.81
    74% 
    BRESCBrevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81)33261.04
    0%
    BRUA1Brucella abortus (strain S19)29890.91
    96% 
    BRUA2Brucella abortus (strain 2308)33290.95
    92% 
    BRUABBrucella abortus30720.89
    95% 
    BRUC2Brucella canis (strain ATCC 23365 / NCTC 10854)32350.93
    95% 
    BRUMBBrucella melitensis biotype 2 (strain ATCC 23457)31200.90
    96% 
    BRUMCBrucella microti (strain CCM 4915)32690.96
    95% 
    BRUMEBrucella melitensis31790.95
    94% 
    BRUO2Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)28190.85
    94% 
    BRUSIBrucella suis (strain ATCC 23445 / NCTC 10510)32130.92
    95% 
    BRUSUBrucella suis32460.93
    94% 
    BUCA5Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)5550.18
    100% 
    BUCAIBuchnera aphidicola subsp. Acyrthosiphon pisum5710.19
    99% 
    BUCAJBuchnera aphidicola subsp. Acyrthosiphon pisum (strain JF98)4770.12
    0%
    BUCAPBuchnera aphidicola subsp. Schizaphis graminum5600.18
    98% 
    BUCATBuchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)5530.18
    100% 
    BUCBPBuchnera aphidicola subsp. Baizongia pistaciae5070.17
    96% 
    BUCCCBuchnera aphidicola subsp. Cinara cedri3650.12
    91% 
    BURA4Burkholderia ambifaria (strain MC40-6)66892.19
    94% 
    BURCABurkholderia cenocepacia (strain AU 1054)64502.09
    99% 
    BURCCBurkholderia cenocepacia (strain MC0-3)69842.29
    97% 
    BURCHBurkholderia cenocepacia (strain HI2424)68972.23
    98% 
    BURCJBurkholderia cepacia (strain J2315 / LMG 16656)71202.31
    95% 
    BURCMBurkholderia cepacia (strain ATCC 53795 / AMMD)66072.18
    95% 
    BURGBBurkholderia glumae (strain BGR1)56561.93
    91% 
    BURM1Burkholderia multivorans (strain ATCC 17616 / 249)61892.00
    94% 
    BURM7Burkholderia mallei (strain NCTC 10247)56171.63
    91% 
    BURM9Burkholderia mallei (strain NCTC 10229)53081.60
    92% 
    BURMABurkholderia mallei47971.51
    90% 
    BURMSBurkholderia mallei (strain SAVP1)49751.47
    91% 
    BURP0Burkholderia pseudomallei (strain 1106a)71462.07
    85% 
    BURP1Burkholderia pseudomallei (strain 1710b)63102.45
    85% 
    BURP6Burkholderia pseudomallei (strain 668)72142.07
    84% 
    BURP8Burkholderia phymatum (strain DSM 17167 / STM815)74612.42
    87% 
    BURPPBurkholderia phytofirmans (strain DSM 17436 / PsJN)71972.32
    92% 
    BURPSBurkholderia pseudomallei58382.01
    97% 
    BURS3Burkholderia sp. (strain 383)77062.52
    92% 
    BURSGBurkholderia sp. (strain CCGE1003)59832.00
    0%
    BURTABurkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)55251.92
    92% 
    BURVGBurkholderia vietnamiensis (strain G4 / LMG 22486)74012.32
    85% 
    BURXLBurkholderia xenovorans (strain LB400)85892.75
    86% 
    CAEBECaenorhabditis brenneri253859.69
    59% 
    CAEBRCaenorhabditis briggsae192367.96
    78% 
    CAEELCaenorhabditis elegans (Nematode)201848.44
    76% 
    CAEJACaenorhabditis japonica (Nematode)189717.37
    63% 
    CAERECaenorhabditis remanei3109612.57
    61% 
    CALJACallithrix jacchus (Marmoset)2434011.75
    80% 
    CALMQCaldivirga maquilingensis (strain DSMZ 13496 / IC-167)19620.60
    81% 
    CALNYCalditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1)20890.68
    0%
    CALS8Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903)26190.83
    88% 
    CAMC1Campylobacter concisus (strain 13826)20600.62
    80% 
    CAMC5Campylobacter curvus (strain 525.92)19280.57
    84% 
    CAMFFCampylobacter fetus subsp. fetus (strain 82-40)17150.53
    87% 
    CAMHCCampylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)16870.48
    72% 
    CAMJ8Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)16220.51
    96% 
    CAMJCCampylobacter jejuni subsp. jejuni serotype HS:41 (strain ICDCCJ07001)15300.48
    ---
    CAMJDCampylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)17100.50
    87% 
    CAMJECampylobacter jejuni16420.52
    96% 
    CAMJJCampylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176)17470.53
    90% 
    CAMJRCampylobacter jejuni (strain RM1221)18320.54
    89% 
    CAMLRCampylobacter lari (strain RM2100 / D67 / ATCC BAA-1060)15450.49
    92% 
    CANALCandida albicans56952.74
    84% 
    CANFACanis familiaris (Dog)2020810.50
    91% 
    CANGACandida glabrata (Yeast)47522.42
    86% 
    CAPI1Capitella sp. I3156211.37
     45%
    CAPODCapnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845)21700.75
    76% 
    CARHZCarboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)25980.72
    75% 
    CARRPCarsonella ruddii (strain PV)1820.05
     45%
    CATADCatenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897)89083.09
    72% 
    CAUCNCaulobacter crescentus (strain NA1000 / CB15N)38521.22
    95% 
    CAUCRCaulobacter crescentus37141.20
    95% 
    CAUSKCaulobacter sp. (strain K31)53711.71
    84% 
    CAUSTCaulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)41361.35
    0%
    CAVPOCavia porcellus (Guinea pig)1894010.00
    93% 
    CELJUCellvibrio japonicus (strain Ueda107)37121.37
    79% 
    CENSYCenarchaeum symbiosum20130.62
    59% 
    CHICKGallus gallus (Chicken)173938.41
    84% 
    CHIPDChitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)71792.68
    68% 
    CHLAAChloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)38501.41
    99% 
    CHLABChlamydophila abortus9600.34
    97% 
    CHLADChloroflexus aggregans (strain MD-66 / DSM 9485)37251.35
    92% 
    CHLCHChlorobium chlorochromatii (strain CaD3)19900.75
    88% 
    CHLCVChlamydophila caviae10050.35
    94% 
    CHLFFChlamydophila felis (strain Fe/C-56)10120.36
    94% 
    CHLL2Chlorobium limicola (strain DSM 245 / NBRC 103803)24190.79
    90% 
    CHLMUChlamydia muridarum9110.32
    94% 
    CHLP8Chlorobaculum parvum (strain NCIB 8327)20440.66
    93% 
    CHLPBChlorobium phaeobacteroides (strain BS1)24340.74
    85% 
    CHLPDChlorobium phaeobacteroides (strain DSM 266)25790.85
    86% 
    CHLPNChlamydia pneumoniae10510.36
    91% 
    CHLPPChlamydophila pneumoniae (strain LPCoLN)11050.37
    88% 
    CHLREChlamydomonas reinhardtii1690012.13
     28%
    CHLSYChloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)41531.43
    92% 
    CHLT0Chlamydia trachomatis serovar G (strain G/11222)9270.31
    0%
    CHLT2Chlamydia trachomatis (strain L2/434/Bu / ATCC VR902B)8980.31
    99% 
    CHLT3Chloroherpeton thalassium (strain ATCC 35110 / GB-78)27080.95
    75% 
    CHLT7Chlamydia trachomatis serovar G (strain G/9768)9200.31
    0%
    CHLTAChlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B)9190.32
    97% 
    CHLTBChlamydia trachomatis (strain L2b/UCH-1/proctitis)8970.31
    99% 
    CHLTDChlamydia trachomatis serovar D (strain D-EC)8780.31
    0%
    CHLTEChlorobium tepidum22510.63
    79% 
    CHLTJChlamydia trachomatis (strain B/Jali20/OT)9000.32
    99% 
    CHLTRChlamydia trachomatis8950.31
    99% 
    CHOHOCholoepus hoffmanni (Sloth)123295.43
    92% 
    CHRSDChromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)32981.10
    87% 
    CHRVOChromobacterium violaceum44001.40
    77% 
    CIOINCiona intestinalis (Sea Squirt)154645.86
    56% 
    CIOSACiona savignyi (Pacific transparent sea squirt)139365.29
    55% 
    CITK8Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)50171.44
    82% 
    CITRICitrobacter rodentium (strain ICC168)49611.55
    90% 
    CLAM3Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)31071.01
    92% 
    CLAMSClavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)31661.00
    87% 
    CLOABClostridium acetobutylicum38491.18
    77% 
    CLOB1Clostridium botulinum (strain ATCC 19397 / Type A)35471.04
    95% 
    CLOB6Clostridium botulinum (strain 657 / Type Ba4)39771.13
    91% 
    CLOB8Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)50031.58
    83% 
    CLOBAClostridium botulinum (strain Alaska E43 / type E3)32531.00
    92% 
    CLOBBClostridium botulinum (strain Eklund 17B / type B)35251.05
    88% 
    CLOBHClostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)36691.06
    94% 
    CLOBJClostridium botulinum (strain Kyoto / Type A2)38601.12
    92% 
    CLOBKClostridium botulinum (strain Okra / Type B1)38501.10
    93% 
    CLOBLClostridium botulinum (strain Langeland / NCTC 10281 / Type F)36331.07
    94% 
    CLOBMClostridium botulinum (strain Loch Maree / Type A3)39821.15
    91% 
    CLOCEClostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)32861.14
    77% 
    CLOD6Clostridium difficile (strain 630)37441.18
    94% 
    CLODRClostridium difficile (strain R20291)35421.14
    97% 
    CLOK5Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)38231.11
    77% 
    CLONNClostridium novyi (strain NT)23050.73
    86% 
    CLOP1Clostridium perfringens (strain ATCC 13124 / NCTC 8237)28730.90
    94% 
    CLOPEClostridium perfringens27220.86
    95% 
    CLOPHClostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)38891.31
    77% 
    CLOPSClostridium perfringens (strain SM101)25660.79
    93% 
    CLOTEClostridium tetani24140.81
    88% 
    CLOTHClostridium thermocellum (strain ATCC 27405 / DSM 1237)31021.04
    75% 
    CLOTLClostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8)28810.97
    0%
    COLP3Colwellia psychrerythraea (strain 34H / ATCC BAA-681)48681.50
    74% 
    COPPDCoprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT)14810.44
    63% 
    CORA7Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)25040.81
    82% 
    CORDICorynebacterium diphtheriae23110.74
    84% 
    COREFCorynebacterium efficiens29330.96
    83% 
    CORGBCorynebacterium glutamicum (strain R)30760.96
    90% 
    CORGLCorynebacterium glutamicum30920.96
    85% 
    CORJKCorynebacterium jeikeium (strain K411)20460.71
    88% 
    CORK4Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717)20180.71
    81% 
    CORP2Corynebacterium pseudotuberculosis (strain C231)20530.66
    0%
    CORPFCorynebacterium pseudotuberculosis (strain FRC41)21100.68
    87% 
    CORU7Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109)20090.70
    85% 
    COXB2Coxiella burnetii (strain CbuG_Q212)18260.51
    86% 
    COXBNCoxiella burnetii (strain Dugway 5J108-111)21100.62
    82% 
    COXBRCoxiella burnetii (strain RSA 331 / Henzerling II)18890.51
    84% 
    COXBUCoxiella burnetii18140.51
    90% 
    CRYCDCryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3)13550.47
    76% 
    CRYNECryptococcus neoformans62313.34
    64% 
    CRYPVCryptosporidium parvum38042.27
     35%
    CULQUCulex quinquefasciatus (Southern house mosquito)186428.20
    63% 
    CUPNHCupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)66132.16
    93% 
    CUPPJCupriavidus pinatubonensis (strain JMP134 / LMG 1197)64332.11
    92% 
    CUPTRCupriavidus taiwanensis (strain R1 / LMG 19424)59001.89
    91% 
    CYAA5Cyanothece (strain ATCC 51142)52331.56
    77% 
    CYAP0Cyanothece sp. (strain PCC 8802)44031.34
    85% 
    CYAP2Cyanothece sp. (strain PCC 7822)65572.14
    0%
    CYAP4Cyanothece sp. (strain PCC 7425 / ATCC 29141)52311.61
    74% 
    CYAP7Cyanothece sp. (strain PCC 7424)56521.75
    76% 
    CYAP8Cyanothece sp. (strain PCC 8801)43351.34
    0%
    CYTH3Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)37701.33
    68% 
    DANREDanio rerio (Zebrafish)2435211.48
    78% 
    DAPPUDaphnia pulex (Water flea)300889.92
     32%
    DASNODasypus novemcinctus (Armadillo)153846.16
    83% 
    DEBHADebaryomyces hansenii62633.00
    84% 
    DECARDechloromonas aromatica (strain RCB)41491.37
    86% 
    DEFDSDeferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1)23530.77
    68% 
    DEHE1Dehalococcoides ethenogenes (strain 195)15000.42
    87% 
    DEHSBDehalococcoides sp. (strain BAV1)13550.40
    95% 
    DEHSCDehalococcoides sp. (strain CBDB1)14530.42
    92% 
    DEHSVDehalococcoides sp. (strain VS)14260.42
    94% 
    DEIDVDeinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923)34461.08
    81% 
    DEIGDDeinococcus geothermalis (strain DSM 11300)28210.90
    88% 
    DEIRADeinococcus radiodurans30840.95
    76% 
    DELASDelftia acidovorans (strain DSM 14801 / SPH-1)59662.00
    86% 
    DESAADesulfatibacillum alkenivorans (strain AK-01)51921.87
    70% 
    DESAHDesulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)47771.62
    73% 
    DESAPDesulforudis audaxviator (strain MP104C)21350.66
    79% 
    DESASDesulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644)40161.20
    71% 
    DESATDesulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2)25950.90
    0%
    DESBDDesulfomicrobium baculatum (strain DSM 4028 / VKM B-1378)34211.17
    0%
    DESDGDesulfovibrio desulfuricans (strain G20)37191.11
    74% 
    DESHDDesulfitobacterium hafniense (strain DCB-2 / DSM 10664)48521.50
    89% 
    DESHYDesulfitobacterium hafniense (strain Y51)50151.60
    89% 
    DESK1Desulfurococcus kamchatkensis (strain 1221n / DSM 18924)14700.40
    81% 
    DESMRDesulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1)46631.53
    67% 
    DESOHDesulfococcus oleovorans (strain DSM 6200 / Hxd3)32551.15
    78% 
    DESPSDesulfotalea psychrophila32361.04
    68% 
    DESRDDesulfohalobium retbaense (strain DSM 5692)24550.80
    0%
    DESRMDesulfotomaculum reducens (strain MI-1)32140.98
    81% 
    DESVHDesulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)35171.08
    84% 
    DESVMDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637)31781.11
    89% 
    DESVRDesulfovibrio vulgaris (strain RCH1)32141.06
    0%
    DESVVDesulfovibrio vulgaris subsp. vulgaris (strain DP4)30841.04
    95% 
    DICD3Dickeya dadantii (strain 3937)45501.42
    0%
    DICDCDickeya dadantii (strain Ech703)39601.32
    93% 
    DICDIDictyostelium discoideum (Slime mold)129216.88
     30%
    DICNVDichelobacter nodosus (strain VCS1703A)12730.42
    77% 
    DICT6Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)19120.61
    89% 
    DICTDDictyoglomus turgidum (strain Z-1310 / DSM 6724)17430.57
    95% 
    DICZEDickeya zeae (strain Ech1591)41301.35
    92% 
    DINSHDinoroseobacter shibae (strain DFL 12)40741.29
    86% 
    DIPORDipodomys ordii (Kangaroo rat)156657.82
    95% 
    DROGRDrosophila grimshawi (Fruit fly)146047.35
    85% 
    DROMEDrosophila melanogaster (Fruitfly)143217.55
    85% 
    DROPSDrosophila pseudoobscura (Fruit Fly)98185.10
    95% 
    DROVIDrosophila virilis (Fruit fly)143517.21
    87% 
    DROWIDrosophila willistoni152457.45
    79% 
    DYAFDDyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)57032.08
    77% 
    ECHTEEchinops telfairi (Tenrec)165197.37
    89% 
    ECO10Escherichia coli O103:H2 (strain 12009 / EHEC)51781.57
    95% 
    ECO24Escherichia coli O139:H28 (strain E24377A / ETEC)49121.47
    91% 
    ECO27Escherichia coli O127:H6 (strain E2348/69 / EPEC)47551.46
    94% 
    ECO45Escherichia coli O45:K1 (strain S88 / ExPEC)49471.51
    97% 
    ECO55Escherichia coli (strain 55989 / EAEC)49371.52
    96% 
    ECO57Escherichia coli O157:H752631.60
    94% 
    ECO5EEscherichia coli O157:H7 (strain EC4115 / EHEC)52721.54
    92% 
    ECO5TEscherichia coli O157:H7 (strain TW14359 / EHEC)52411.57
    96% 
    ECO7IEscherichia coli O7:K1 (strain IAI39 / ExPEC)46891.47
    96% 
    ECO81Escherichia coli O81 (strain ED1a)51321.54
    93% 
    ECO8AEscherichia coli O8 (strain IAI1)44141.38
    97% 
    ECOBBEscherichia coli (strain B / BL21)41571.32
    96% 
    ECOBDEscherichia coli (strain B / BL21-DE3)41561.30
    98% 
    ECOBREscherichia coli (strain B / REL606)41411.32
    0%
    ECOBWEscherichia coli (strain K12 / BW2952)40401.29
    98% 
    ECOD1Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1)41231.31
    99% 
    ECODHEscherichia coli (strain DH10B)40501.27
    98% 
    ECOHSEscherichia coli O9:H4 (strain HS)43101.32
    94% 
    ECOK1Escherichia coli O1:K1 / APEC48641.59
    97% 
    ECOL5Escherichia coli O6:K15:H31 (strain 536 / UPEC)46571.45
    95% 
    ECOL6Escherichia coli O653361.56
    90% 
    ECOLBEscherichia coli O104:H4 str. LB22669254301.47
    0%
    ECOLCEscherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)41711.35
    99% 
    ECOLIEscherichia coli (strain K12)43521.37
    98% 
    ECOLUEscherichia coli O17:K52:H18 (strain UMN026 / ExPEC)50541.57
    96% 
    ECOSEEscherichia coli (strain SE11)49821.51
    94% 
    ECOSMEscherichia coli (strain SMS-3-5 / SECEC)48761.50
    93% 
    ECOUTEscherichia coli (strain UTI89 / UPEC)51911.56
    96% 
    EDWI9Edwardsiella ictaluri (strain 93-146)37241.05
    77% 
    EDWTEEdwardsiella tarda (strain EIB202)35681.07
    0%
    EDWTFEdwardsiella tarda (strain FL6-60)32511.04
    0%
    EHRCJEhrlichia canis (strain Jake)9210.31
    89% 
    EHRCREhrlichia chaffeensis (strain Arkansas)10970.31
    73% 
    EHRRGEhrlichia ruminantium (strain Gardel)9490.32
    96% 
    EHRRWEhrlichia ruminantium (strain Welgevonden)9580.32
    95% 
    ELUMPElusimicrobium minutum (strain Pei191)15280.49
    60% 
    EMENIEmericella nidulans105105.07
    76% 
    EMIHUEmiliania huxleyi CCMP15163145411.17
     16%
    ENCCUEncephalitozoon cuniculi18950.69
     32%
    ENT38Enterobacter sp. (strain 638)42361.36
    95% 
    ENTCSEnterobacter cloacae (strain SCF1)43931.42
    0%
    ENTFAEnterococcus faecalis32390.95
    73% 
    ENTS8Enterobacter sakazakii (strain ATCC BAA-894)42551.29
    85% 
    ERIEUErinaceus europaeus (Hedgehog )144896.65
    92% 
    ERWCTErwinia carotovora subsp. atroseptica44781.45
    93% 
    ERWT9Erwinia tasmaniensis (strain DSM 17950 / ET1/99)36911.16
    86% 
    ERYLHErythrobacter litoralis (strain HTCC2594)29990.93
    81% 
    EUBE2Eubacterium eligens (strain ATCC 27750 / VPI C15-48)27610.86
    69% 
    EUBR3Eubacterium rectale (strain ATCC 33656 / VPI 0990)35421.02
    62% 
    EXIS2Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)30050.88
    85% 
    EXISAExiguobacterium sp. (strain ATCC BAA-1283 / AT1b)30200.89
    84% 
    FELCAFelis catus (Cat)147526.69
    94% 
    FERBDFerrimonas balearica (strain DSM 9799 / CCM 4581 / PAT)37811.26
    0%
    FERNBFervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)17250.58
    88% 
    FERPAFerroglobus placidus (strain DSM 10642 / AEDII12DO)24630.66
    75% 
    FIBSSFibrobacter succinogenes (strain ATCC 19169 / S85)30841.16
     47%
    FINM2Finegoldia magna (strain ATCC 29328)18130.60
    74% 
    FLAB3Flavobacteriaceae bacterium (strain 3519-10)25300.83
    74% 
    FLAJ1Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)50161.77
    78% 
    FLAPJFlavobacterium psychrophilum (strain JIP02/86 / ATCC 49511)24280.81
    83% 
    FRAAAFrankia alni (strain ACN14a)67232.16
    71% 
    FRAP2Francisella philomiragia subsp. philomiragia (strain ATCC 25017)18750.61
    88% 
    FRASCFrankia sp. (strain CcI3)44231.51
    82% 
    FRASNFrankia sp. (strain EAN1pec)71282.47
    73% 
    FRAT1Mycobacteriophage FRAT117220.54
    99% 
    FRATEFrancisella tularensis subsp. tularensis (strain NE061598)17070.49
    93% 
    FRATFFrancisella tularensis subsp. holarctica (strain FTA)15080.46
    97% 
    FRATHFrancisella tularensis subsp. holarctica (strain LVS)18690.53
    86% 
    FRATMFrancisella tularensis subsp. mediasiatica (strain FSC147)13870.44
    99% 
    FRATNFrancisella tularensis subsp. novicida (strain U112)17190.57
    95% 
    FRATOFrancisella tularensis subsp. holarctica (strain OSU18)15060.45
    96% 
    FRATTFrancisella tularensis (subsp. tularensis)17220.54
    99% 
    FRATWFrancisella tularensis subsp. tularensis (strain WY96-3418)15730.48
    97% 
    FUSNNFusobacterium nucleatum subsp. nucleatum20480.64
    69% 
    GARV4Gardnerella vaginalis (strain 409-05)12560.46
    74% 
    GASACGasterosteus aculeatus (Three spined stickleback)2183211.12
    83% 
    GEOBBGeobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)40091.33
    93% 
    GEOKAGeobacillus kaustophilus35031.00
    89% 
    GEOLSGeobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)36431.20
    83% 
    GEOMGGeobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)34611.19
    91% 
    GEOOGGeodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20)47951.49
    79% 
    GEOS4Geobacillus sp. (strain Y412MC10)62372.03
    79% 
    GEOSFGeobacter sp. (strain FRC-32)37971.29
    88% 
    GEOSLGeobacter sulfurreducens34151.13
    88% 
    GEOSMGeobacter sp. (strain M21)40671.36
    93% 
    GEOSWGeobacillus sp. (strain WCH70)30480.88
    91% 
    GEOSYGeobacillus sp. (strain Y412MC61)34141.00
    92% 
    GEOTNGeobacillus thermodenitrificans (strain NG80-2)34191.00
    89% 
    GEOURGeobacter uraniumreducens (strain Rf4)42531.45
    87% 
    GIALAGiardia lamblia47402.64
     19%
    GLOVIGloeobacter violaceus44061.38
    61% 
    GLUDAGluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)38501.19
    78% 
    GLUOXGluconobacter oxydans26030.85
    80% 
    GORB4Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667)45461.48
    0%
    GORGOGorilla gorilla (Gorilla)2180911.01
    90% 
    GRABCGranulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)24350.82
    84% 
    GRAFKGramella forsetii (strain KT0803)35541.14
    74% 
    GUITHGuillardia theta (nucleomorph only)5990.18
     48%
    HAEDUHaemophilus ducreyi16930.47
    83% 
    HAEI2Haemophilus influenzae (strain R2846 / 12)16300.52
    0%
    HAEI8Haemophilus influenzae (strain 86-028NP)17880.55
    95% 
    HAEIEHaemophilus influenzae (strain PittEE)16180.48
    93% 
    HAEIGHaemophilus influenzae (strain PittGG)16650.47
    92% 
    HAEINHaemophilus influenzae17030.52
    94% 
    HAEPSHaemophilus parasuis serovar 5 (strain SH0165)19910.59
    88% 
    HAES1Haemophilus somnus (strain 129PT)17920.59
    92% 
    HAES2Haemophilus somnus (strain 2336)19710.66
    91% 
    HAHCHHahella chejuensis (strain KCTC 2396)67002.11
    65% 
    HALHLHalorhodospira halophila (strain DSM 244 / SL1)24050.82
    82% 
    HALJBHalalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3)37791.01
    72% 
    HALLTHalorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)34931.01
    78% 
    HALMAHaloarcula marismortui42251.20
    78% 
    HALMDHalomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541)31680.90
    85% 
    HALNCHalothiobacillus neapolitanus (strain ATCC 23641 / c2)23530.76
    0%
    HALOHHalothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)23240.74
    77% 
    HALS3Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)27420.76
    90% 
    HALSAHalobacterium salinarium24110.68
    93% 
    HALTVHaloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734)37391.09
    83% 
    HALUDHalorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2)29980.91
    80% 
    HALVDHaloferax volcanii (strain ATCC 29605 / DSM 3757 / IFO 14742 / NCIMB 2012 / DS2)39861.13
    79% 
    HALWDHaloquadratum walsbyi (strain DSM 16790)28190.80
    74% 
    HAMD5Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT)20390.56
    66% 
    HELAHHelicobacter acinonychis (strain Sheeba)15940.46
    81% 
    HELHPHelicobacter hepaticus18720.56
    71% 
    HELMIHeliobacterium modesticaldum (strain ATCC 51547 / Ice1)29180.85
    69% 
    HELP2Helicobacter pylori (strain P12)15730.50
    93% 
    HELP3Helicobacter pylori (strain B8)17110.51
    0%
    HELP5Helicobacter pylori (strain 52)14030.46
    0%
    HELP9Helicobacter pylori (strain 908)15950.47
    0%
    HELPBHelicobacter pylori (strain B38)15090.48
    93% 
    HELPFHelicobacter pylori (strain 35A)14640.46
    0%
    HELPGHelicobacter pylori (strain G27)15000.48
    95% 
    HELPHHelicobacter pylori (strain HPAG1)15390.49
    93% 
    HELPJHelicobacter pylori J9914880.49
    96% 
    HELPPHelicobacter pylori (strain PeCan4)15630.48
    0%
    HELPSHelicobacter pylori (strain Shi470)15640.48
    89% 
    HELPVHelicobacter pylori (strain v225d)15470.47
    0%
    HELPYHelicobacter pylori15550.49
    92% 
    HELROHelobdella robusta232638.76
     40%
    HERA2Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785)52541.96
    61% 
    HERARHerminiimonas arsenicoxydans33211.00
    87% 
    HIRBIHirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418)31871.05
    81% 
    HORSEEquus caballus (Horse)2027510.35
    92% 
    HUMANHomo sapiens (Human)2865912.76
    68% 
    HYDS0Hydrogenobaculum sp. (strain Y04AAS1)16260.49
    78% 
    HYDTTHydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)18920.56
    0%
    HYPBUHyperthermus butylicus (strain DSM 5456 / JCM 9403)16020.45
    72% 
    HYPDAHyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415)34491.05
    0%
    HYPNAHyphomonas neptunium (strain ATCC 15444)34991.11
    81% 
    IDILOIdiomarina loihiensis26080.86
    88% 
    IGNAAIgnisphaera aggregans strain (strain DSM 17230 / JCM 13409 / AQ1.S1)19290.54
    66% 
    IGNH4Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)14340.40
    62% 
    IXOSCIxodes scapularis (Tick)204545.81
     38%
    JANMAJanthinobacterium sp. (strain Marseille) (Minibacterium massiliensis)36951.22
    92% 
    JANSCJannaschia sp. (strain CCS1)42691.32
    81% 
    JONDDJonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134)24950.82
    81% 
    KINRDKineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)46731.49
    76% 
    KLEP3Klebsiella pneumoniae (strain 342)57381.71
    88% 
    KLEP7Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)51161.60
    94% 
    KLEVTKlebsiella variicola (strain At-22)50561.60
    0%
    KLULAKluyveromyces lactis (Yeast)52302.48
    84% 
    KOCRDKocuria rhizophila (strain ATCC 9341 / NBRC 12708 / DC2201)23530.79
    83% 
    KORCOKorarchaeum cryptofilum (strain OPF8)16020.47
    71% 
    KRIFDKribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)69402.26
    0%
    KYTSDKytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541)25310.81
    78% 
    LACACLactobacillus acidophilus18600.58
    85% 
    LACBALactobacillus brevis (strain ATCC 367 / JCM 1170)21990.65
    82% 
    LACBILaccaria bicolor200527.45
     35%
    LACC3Lactobacillus casei (strain ATCC 334)27060.78
    91% 
    LACCBLactobacillus casei (strain BL23)29990.86
    89% 
    LACCSLactobacillus crispatus (strain ST1)20010.60
    0%
    LACDALactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081)20140.52
    77% 
    LACDBLactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365)16790.47
    89% 
    LACDNLactobacillus delbrueckii subsp. bulgaricus (strain ND02)19970.58
    0%
    LACF3Lactobacillus fermentum (strain IFO 3956 / LMG 18251)18180.55
    85% 
    LACFCLactobacillus fermentum (strain CECT 5716)10410.39
    0%
    LACGALactobacillus gasseri (strain ATCC 33323 / DSM 20243)16940.54
    92% 
    LACH4Lactobacillus helveticus (strain DPC 4571)15760.50
    92% 
    LACJOLactobacillus johnsonii18120.59
    89% 
    LACLALactococcus lactis subsp. lactis22210.66
    89% 
    LACLKLactococcus lactis subsp. lactis (strain KF147)25580.75
    0%
    LACLMLactococcus lactis subsp. cremoris (strain MG1363)24530.71
    87% 
    LACLSLactococcus lactis subsp. cremoris (strain SK11)24360.68
    85% 
    LACLVLactococcus lactis subsp. lactis (strain CV56)23620.68
    0%
    LACPJLactobacillus plantarum (strain JDM1)29470.89
    94% 
    LACPLLactobacillus plantarum30900.94
    92% 
    LACRDLactobacillus reuteri (strain DSM 20016)18640.56
    96% 
    LACRGLactobacillus rhamnosus (strain ATCC 53103 / GG)28770.84
    91% 
    LACRJLactobacillus reuteri (strain JCM 1112)17920.56
    99% 
    LACRLLactobacillus rhamnosus (strain Lc 705)29520.86
    90% 
    LACS1Lactobacillus salivarius subsp. salivarius (strain UCC118)20010.58
    79% 
    LACSCLactobacillus salivarius (strain CECT 5713)15320.54
    0%
    LACSSLactobacillus sakei subsp. sakei (strain 23K)18710.54
    83% 
    LAMPALama guanicoe pacos (Alpaca)116715.48
    93% 
    LARHHLaribacter hongkongensis (strain HLHK9)32060.92
    73% 
    LAWIPLawsonia intracellularis (strain PHE/MN1-00)13440.48
    80% 
    LEAB4Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15)34261.20
    0%
    LEGLNLegionella longbeachae serogroup 1 (strain NSW150)36461.19
    68% 
    LEGPALegionella pneumophila (strain Paris)30591.02
    95% 
    LEGPCLegionella pneumophila (strain Corby)32041.03
    91% 
    LEGPHLegionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152)29151.00
    95% 
    LEGPLLegionella pneumophila (strain Lens)29300.98
    94% 
    LEIBRLeishmania braziliensis80195.03
    92% 
    LEIINLeishmania infantum80315.02
    96% 
    LEIMALeishmania major78975.10
    98% 
    LEIXXLeifsonia xyli subsp. xyli20030.59
    76% 
    LEPBALeptospira biflexa serovar Patoc (strain Patoc 1 / Ames)35941.21
    99% 
    LEPBDLeptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249)22170.68
    71% 
    LEPBJLeptospira borgpetersenii serovar Hardjo-bovis (strain JB197)28270.92
    99% 
    LEPBLLeptospira borgpetersenii serovar Hardjo-bovis (strain L550)28710.94
    99% 
    LEPBPLeptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)37231.22
    96% 
    LEPCPLeptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6)43431.50
    87% 
    LEPICLeptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni36471.15
    94% 
    LEPINLeptospira interrogans46871.21
    74% 
    LEUCKLeuconostoc citreum (strain KM20)18120.56
    88% 
    LEUGTLeuconostoc gasicomitatum (strain DSM 15947 / CECT 5767 / JCM 12535 / LMG 18811 / TB1-10)19100.57
    0%
    LEUMMLeuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523)20020.61
    86% 
    LIBAPLiberibacter asiaticus (strain psy62)10990.32
    0%
    LISINListeria innocua30320.91
    95% 
    LISM2Listeria monocytogenes serotype 1/2a (strain 08-5923)29610.89
    97% 
    LISMCListeria monocytogenes serotype 4b (strain Clip81459)27890.86
    99% 
    LISMFListeria monocytogenes (serotype 4b / strain F2365)28180.85
    97% 
    LISMHListeria monocytogenes serotype 4a (strain HCC23)29710.88
    93% 
    LISMLListeria monocytogenes serotype 4c (strain L99)29230.88
    0%
    LISMOListeria monocytogenes28500.87
    99% 
    LISW6Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)27750.83
    93% 
    LODELLodderomyces elongisporus57722.94
    78% 
    LOTGILottia gigantea (Limpet)235148.96
    55% 
    LOXAFLoxodonta africana (African elephant)2103710.71
    90% 
    LYSSCLysinibacillus sphaericus (strain C3-41)47501.28
    71% 
    MACCJMacrococcus caseolyticus (strain JCSC5402)20590.64
    85% 
    MACEUMacropus eugenii (Wallaby)152577.26
    92% 
    MACMUMacaca mulatta (Rhesus macaque)2489111.40
    79% 
    MAGGRMagnaporthe grisea (rice blast fungus)126375.57
    57% 
    MAGSAMagnetospirillum magneticum (strain AMB-1 / ATCC 700264)45111.45
    72% 
    MAGSMMagnetococcus sp. (strain MC-1)35891.33
    66% 
    MAIZEZea mays (Maize)10725823.46
     24%
    MANESManihot esculenta (Cassava)3273712.78
    73% 
    MANSMMannheimia succiniciproducens (strain MBEL55E)23660.69
    83% 
    MARAHMarinobacter adhaerens (strain HP15)44061.39
    0%
    MARAVMarinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)41681.39
    82% 
    MARMMMaricaulis maris (strain MCS10)30601.01
    80% 
    MARMSMarinomonas sp. (strain MWYL1)44151.48
    84% 
    MEIRDMeiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21)29930.93
    78% 
    MELGAMeleagris gallopavo (Turkey)160707.66
    88% 
    MESCWMesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)62601.92
    0%
    MESFLMesoplasma florum6830.25
    77% 
    MESSBMesorhizobium sp. (strain BNC1)45301.45
    86% 
    META3Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)14900.44
    92% 
    METACMethanosarcina acetivorans44631.39
    73% 
    METB6Methanoregula boonei (strain 6A8)24500.73
    77% 
    METBFMethanosarcina barkeri (strain Fusaro / DSM 804)36001.12
    83% 
    METBUMethanococcoides burtonii (strain DSM 6242)22420.68
    84% 
    METC4Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688)54901.70
    92% 
    METCAMethylococcus capsulatus29250.97
    73% 
    METEAMethylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1)62331.86
    81% 
    METEDMethylobacterium extorquens (strain DSM 5838 / DM4)58821.71
    89% 
    METEPMethylobacterium extorquens (strain PA1)48221.53
    95% 
    METEZMethanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303)22480.67
    81% 
    METFAMethanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86)15460.44
    95% 
    METFKMethylobacillus flagellatus (strain KT / ATTC 51484 / DSM 6875)26080.85
    90% 
    METHJMethanospirillum hungatei (strain JF-1 / DSM 864)30840.99
    69% 
    METI4Methylokorus infernorum (strain V4)24700.69
    52% 
    METIMMethanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)14390.41
    94% 
    METJAMethanocaldococcus jannaschii17820.50
    91% 
    METKAMethanopyrus kandleri16900.50
    57% 
    METLZMethanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)17390.52
    79% 
    METM5Methanococcus maripaludis (strain C5 / ATCC BAA-1333)18210.51
    94% 
    METM6Methanococcus maripaludis (strain C6 / ATCC BAA-1332)18250.51
    94% 
    METM7Methanococcus maripaludis (strain C7 / ATCC BAA-1331)17850.51
    96% 
    METMAMethanosarcina mazei32981.00
    86% 
    METMIMethanococcus maripaludis18490.51
    95% 
    METMJMethanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)24740.71
    81% 
    METMLMethylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540)23340.76
    91% 
    METMPMethanococcus maripaludis17220.49
    98% 
    METMSMethanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP)19860.59
    90% 
    METNOMethylobacterium nodulans (strain ORS2060 / LMG 21967)81252.31
    76% 
    METP4Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847)27790.83
    76% 
    METPBMethylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)53251.65
    92% 
    METPEMethanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)26550.82
    75% 
    METPPMethylibium petroleiphilum (strain PM1)43551.38
    82% 
    METPSMethanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE)29920.85
    79% 
    METRJMethylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)63851.94
    84% 
    METRMMethanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1)22070.76
    68% 
    METS3Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)17830.55
    79% 
    METS4Methylobacterium sp. (strain 4-46)66462.08
    87% 
    METS5Metallosphaera sedula (strain ATCC 51363 / DSM 5348)22560.64
    88% 
    METSBMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)38161.22
    85% 
    METSDMethylovorus sp. (strain SIP3-4)29060.93
    86% 
    METSFMethanocaldococcus sp. (strain FS406-22)18030.51
    93% 
    METSTMethanosphaera stadtmanae (strain DSM 3091)15300.49
    78% 
    METTHMethanobacterium thermoautotrophicum18680.52
    87% 
    METTMMethanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg)17550.49
    92% 
    METTPMethanosaeta thermophila (strain DSM 6194 / PT)16730.51
    78% 
    METV3Methanococcus voltae (strain ATCC BAA-1334 / A3)16570.50
    81% 
    METVMMethanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7)17250.49
    91% 
    METVSMethanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)16610.48
    95% 
    MICAIMicromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442)62032.09
    0%
    MICANMicrocystis aeruginosa (strain NIES-843)59461.51
    60% 
    MICMUMicrocebus murinus (Mouse lemur)162247.67
    95% 
    MONBEMonosiga brevicollis91645.50
     36%
    MONDOMonodelphis domestica (Opossum)2184311.44
    83% 
    MOOTAMoorella thermoacetica (strain ATCC 39073)24500.75
    85% 
    MOUSEMus musculus (Mouse)2486511.87
    82% 
    MYCA1Mycobacterium avium (strain 104)50351.58
    89% 
    MYCA5Mycoplasma arthritidis (strain 158L3-1)6310.24
    75% 
    MYCA9Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)49391.57
    82% 
    MYCAPMycoplasma agalactiae (strain PG2)7480.26
    69% 
    MYCBGMycoplasma bovis (strain ATCC 25523 / PG45)7420.27
    0%
    MYCBOMycobacterium bovis39391.31
    99% 
    MYCBPMycobacterium bovis (strain BCG / Paris 1173P2)39241.31
    99% 
    MYCBTMycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019)39241.31
    99% 
    MYCCMMycoplasma crocodyli (strain ATCC 51981 / MP145)6890.25
    0%
    MYCCRMycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)6940.26
    74% 
    MYCCTMycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)8110.30
    85% 
    MYCGAMycoplasma gallisepticum7260.29
    98% 
    MYCGEMycoplasma genitalium4830.18
    96% 
    MYCGHMycoplasma gallisepticum (strain R(high / passage 156))7630.30
    93% 
    MYCGIMycobacterium gilvum (strain PYR-GCK)54931.80
    93% 
    MYCGRMycosphaerella graminicola109324.77
    64% 
    MYCH2Mycoplasma hyopneumoniae (strain 232)6820.27
    91% 
    MYCH7Mycoplasma hyopneumoniae (strain 7448)6570.26
    96% 
    MYCHJMycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)6590.26
    94% 
    MYCHPMycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21)5360.20
    84% 
    MYCLBMycobacterium leprae (strain Br4923)26910.83
    99% 
    MYCLEMycobacterium leprae26910.83
    99% 
    MYCLGMycoplasma leachii (strain DSM 21131 / NCTC 10133 / N29 / PG50)8800.30
    0%
    MYCMMMycobacterium marinum (strain ATCC BAA-535 / M)54181.98
    91% 
    MYCMOMycoplasma mobile6350.24
    74% 
    MYCMSMycoplasma mycoides subsp. mycoides SC9750.32
    72% 
    MYCPAMycobacterium paratuberculosis43171.46
    95% 
    MYCPEMycoplasma penetrans10280.40
    54% 
    MYCPNMycoplasma pneumoniae6860.24
    71% 
    MYCPUMycoplasma pulmonis7780.29
    70% 
    MYCS2Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)65932.08
    87% 
    MYCS5Mycoplasma synoviae (strain 53)6690.24
    71% 
    MYCSJMycobacterium sp. (strain JLS)56951.86
    97% 
    MYCSKMycobacterium sp. (strain KMS)58891.90
    98% 
    MYCSSMycobacterium sp. (strain MCS)55861.82
    99% 
    MYCTAMycobacterium tuberculosis (strain ATCC 25177 / H37Ra)39911.33
    99% 
    MYCTFMycobacterium tuberculosis (strain F11)38551.30
    99% 
    MYCTKMycobacterium tuberculosis (strain KZN 1435 / MDR)40211.33
    0%
    MYCTUMycobacterium tuberculosis39541.33
    99% 
    MYCUAMycobacterium ulcerans (strain Agy99)41941.39
    90% 
    MYCVPMycobacterium vanbaalenii (strain DSM 7251 / PYR-1)59011.95
    93% 
    MYOLUMyotis lucifugus (Microbat)1986210.19
    91% 
    MYXXDMyxococcus xanthus (strain DK 1622)72162.76
    57% 
    NAKMYNakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104)51201.71
    79% 
    NANEQNanoarchaeum equitans5360.15
     47%
    NATMMNatrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3)35581.05
    78% 
    NATPDNatronomonas pharaonis (strain DSM 2160 / ATCC 35678)28010.82
    82% 
    NATTJNatranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)28360.89
    75% 
    NAUPANautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)17300.52
    80% 
    NEIG1Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)19430.55
    92% 
    NEIG2Neisseria gonorrhoeae (strain NCCP11945)25920.63
    72% 
    NEIM0Neisseria meningitidis serogroup C (strain 053442)19980.57
    91% 
    NEIM8Neisseria meningitidis serogroup C (strain 8013)20980.61
    0%
    NEIMANeisseria meningitidis serogroup A19710.59
    95% 
    NEIMBNeisseria meningitidis serogroup B20010.58
    90% 
    NEIMFNeisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18)19390.59
    97% 
    NEIMHNeisseria meningitidis serogroup B / serotype 15 (strain H44/76)19900.60
    0%
    NEIMLNeisseria meningitidis (strain alpha14)19110.57
    93% 
    NEIMMNeisseria meningitidis serogroup B (strain M01-240149)19600.59
    0%
    NEMVENematostella vectensis (Sea anemone)260368.87
    51% 
    NEORINeorickettsia risticii (strain Illinois)8980.25
    79% 
    NEOSMNeorickettsia sennetsu (strain Miyayama)9300.25
    77% 
    NEUCRNeurospora crassa75693.68
    64% 
    NITECNitrosomonas eutropha (strain C71)24700.77
    88% 
    NITEUNitrosomonas europaea24720.80
    90% 
    NITHXNitrobacter hamburgensis (strain X14 / DSM 10229)42261.29
    85% 
    NITMSNitrosopumilus maritimus (strain SCM1)17950.49
    71% 
    NITMUNitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)27230.90
    83% 
    NITOCNitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)29440.98
    75% 
    NITSBNitratiruptor sp. (strain SB155-2)18570.59
    85% 
    NITWNNitrobacter winogradskyi (strain Nb-255 / ATCC 25391)29560.92
    90% 
    NOCFANocardia farcinica59431.89
    79% 
    NOCSJNocardioides sp. (strain BAA-499 / JS614)48841.59
    77% 
    NOMLENomascus leucogenys (Northern white-cheeked gibbon)1917310.17
    92% 
    NOSA0Nostoc azollae (strain 0708)36460.94
    0%
    NOSP7Nostoc punctiforme (strain ATCC 29133 / PCC 73102)65722.29
    77% 
    NOSS1Nostoc sp. (strain PCC 7120 / UTEX 2576)60691.96
    85% 
    NOVADNovosphingobium aromaticivorans (strain DSM 12444)39171.29
    83% 
    OCEIHOceanobacillus iheyensis34921.02
    85% 
    OCHA4Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)47571.50
    91% 
    OCHPROchotona princeps (Pika)157177.67
    95% 
    OENOBOenococcus oeni (strain BAA-331 / PSU-1)16820.49
    79% 
    OLICOOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)38451.13
    83% 
    ONYPEOnion yellows phytoplasma7260.20
    66% 
    OPITPOpitutus terrae (strain DSM 11246 / PB90-1)45881.75
    58% 
    ORITBOrientia tsutsugamushi (strain Boryong)18040.50
    55% 
    ORITIOrientia tsutsugamushi (strain Ikeda)16250.44
    64% 
    ORNANOrnithorhynchus anatinus (Platypus)197308.05
    71% 
    ORYLAOryzias latipes (Medaka fish)2049910.19
    83% 
    ORYSJOryza sativa Japonica Group (Rice)5824626.16
     41%
    OSTLUOstreococcus lucimarinus74102.99
    77% 
    OSTTAOstreococcus tauri78603.38
    58% 
    OTOGAOtolemur garnettii (Bushbaby)153837.01
    93% 
    PAEPSPaenibacillus polymyxa (strain SC2)60241.74
    0%
    PAESJPaenibacillus sp. (strain JDR-2)62092.10
    77% 
    PANAMPantoea ananatis (strain LMG 20103)42371.37
    0%
    PANTRPan troglodytes (Chimpanzee)2328311.04
    85% 
    PARD8Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)38311.44
    79% 
    PARDPParacoccus denitrificans (strain Pd 1222)50151.56
    83% 
    PARL1Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)35791.15
    87% 
    PARUWProtochlamydia amoebophila (strain UWE25)20240.66
     49%
    PASMUPasteurella multocida20140.67
    93% 
    PECCPPectobacterium carotovorum subsp. carotovorum (strain PC1)42451.40
    94% 
    PECWWPectobacterium wasabiae (strain WPP163)44311.42
    0%
    PEDHCPediculus humanus corporis (Body louse)107335.53
    67% 
    PEDHDPedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290)42491.59
    77% 
    PEDPAPediococcus pentosaceus (strain ATCC 25745 / 183-1w)17550.54
    87% 
    PELCDPelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)33401.06
    77% 
    PELLDPelodictyon luteolum (strain DSM 273)20740.70
    93% 
    PELPBPelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)26850.85
    85% 
    PELPDPelobacter propionicus (strain DSM 2379)36911.20
    82% 
    PELTSPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)28780.85
    76% 
    PELUBPelagibacter ubique13530.42
    77% 
    PERMHPersephonella marina (strain DSM 14350 / EX-H1)20470.62
    78% 
    PETMOPetrotoga mobilis (strain DSM 10674 / SJ95)18890.64
    80% 
    PHANOPhaeosphaeria nodorum164896.45
     48%
    PHEZHPhenylobacterium zucineum (strain HLK1)38371.28
    90% 
    PHOAAPhotorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)43431.39
    82% 
    PHOLLPhotorhabdus luminescens subsp. laumondii47661.54
    81% 
    PHOPRPhotobacterium profundum52221.66
    82% 
    PHYASPhytoplasma australiense7800.21
    57% 
    PHYMTPhytoplasma mali (strain AT)4620.15
    74% 
    PICSTPichia stipitis58002.85
    91% 
    PICTOPicrophilus torridus15350.47
    81% 
    PIGXXSus scrofa (Pig)172188.04
    90% 
    PLAF7Plasmodium falciparum (Malaria parasite)55034.10
     26%
    PLAL2Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)42581.53
    55% 
    POLNAPolaromonas naphthalenivorans (strain CJ2)48731.56
    85% 
    POLNSPolynucleobacter necessarius (strain STIR1)15070.40
    77% 
    POLSJPolaromonas sp. (strain JS666 / ATCC BAA-500)54361.71
    86% 
    POLSQPolynucleobacter sp. (strain QLW-P1DMWA-1)20740.67
    90% 
    PONABPongo pygmaeus abelii (Orangutan)200899.95
    94% 
    POPTRPopulus trichocarpa (Western balsam poplar)4433814.80
    59% 
    PORG3Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)20210.66
    83% 
    PORGIPorphyromonas gingivalis18620.63
    88% 
    PRIPAPristionchus pacificus (Nematode)293638.48
     24%
    PROA2Prosthecochloris aestuarii (strain DSM 271 / SK 413)23190.75
    88% 
    PROACPropionibacterium acnes22940.76
    72% 
    PROCAProcavia capensis (Hyrax)159547.85
    95% 
    PROM0Prochlorococcus marinus (strain MIT 9301)19060.50
    91% 
    PROM1Prochlorococcus marinus (strain NATL1A)21730.54
    89% 
    PROM2Prochlorococcus marinus (strain MIT 9215)19830.52
    89% 
    PROM3Prochlorococcus marinus (strain MIT 9303)29830.76
    72% 
    PROM4Prochlorococcus marinus (strain MIT 9211)18540.50
    87% 
    PROM5Prochlorococcus marinus (strain MIT 9515)18990.50
    90% 
    PROM9Prochlorococcus marinus (strain MIT 9312)19590.51
    90% 
    PROMAProchlorococcus marinus18810.52
    89% 
    PROMHProteus mirabilis (strain HI4320)37361.16
    85% 
    PROMMProchlorococcus marinus (strain MIT 9313)22640.66
    90% 
    PROMPProchlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)19520.50
    90% 
    PROMSProchlorococcus marinus (strain AS9601)19200.50
    92% 
    PROMTProchlorococcus marinus (strain NATL2A)21410.53
    90% 
    PROVIProsthecochloris vibrioformis (strain DSM 265)17500.59
    95% 
    PSE14Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)50541.66
    92% 
    PSEA6Pseudoalteromonas atlantica (strain T6c / BAA-1087)42711.49
    85% 
    PSEA7Pseudomonas aeruginosa (strain PA7)62461.95
    90% 
    PSEA8Pseudomonas aeruginosa (strain LESB58)59371.94
    96% 
    PSEABPseudomonas aeruginosa (strain UCBPP-PA14)58861.94
    97% 
    PSEAEPseudomonas aeruginosa55571.86
    99% 
    PSEE4Pseudomonas entomophila (strain L48)51591.74
    92% 
    PSEF5Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)61352.09
    92% 
    PSEFSPseudomonas fluorescens (strain SBW25)64752.11
    85% 
    PSEHTPseudoalteromonas haloplanktis (strain TAC 125)34791.12
    85% 
    PSEMYPseudomonas mendocina (strain ymp)45631.50
    93% 
    PSEP1Pseudomonas putida (strain F1 / ATCC 700007)52441.76
    96% 
    PSEPFPseudomonas fluorescens (strain PfO-1)57261.92
    92% 
    PSEPGPseudomonas putida (strain GB-1)53961.80
    94% 
    PSEPKPseudomonas putida (strain KT2440)53111.77
    93% 
    PSEPWPseudomonas putida (strain W619)51791.71
    94% 
    PSESMPseudomonas syringae pv. tomato54231.79
    90% 
    PSEU2Pseudomonas syringae pv. syringae (strain B728a)51161.78
    94% 
    PSEU5Pseudomonas stutzeri (strain A1501)40931.35
    90% 
    PSEU9Pseudoalteromonas sp. (strain SM9913)36951.17
    0%
    PSEUUPseudoxanthomonas suwonensis (strain 11-1)30681.01
    0%
    PSYA2Psychrobacter arcticus (strain DSM 17307 / 273-4)21250.71
    92% 
    PSYCKPsychrobacter cryohalolentis (strain K5)24510.84
    93% 
    PSYINPsychromonas ingrahamii (strain 37)35301.17
    84% 
    PSYWFPsychrobacter sp. (strain PRwf-1)23380.82
    87% 
    PTEVAPteropus vampyrus (Megabat)168819.06
    98% 
    PUCGTPuccinia graminis f. sp. tritici (Black rust)203647.51
     18%
    PUNMIPuniceispirillum marinum (strain IMCC1322)25450.83
    78% 
    PYRABPyrococcus abyssi17860.54
    95% 
    PYRAEPyrobaculum aerophilum26000.66
    80% 
    PYRARPyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)22950.61
    90% 
    PYRCJPyrobaculum calidifontis (strain JCM 11548 / VA1)21480.61
    91% 
    PYRFUPyrococcus furiosus20520.58
    87% 
    PYRHOPyrococcus horikoshii20770.57
    78% 
    PYRILPyrobaculum islandicum (strain DSM 4184 / JCM 9189)19760.53
    90% 
    PYRKOThermococcus kodakaraensis23000.64
    86% 
    RABITOryctolagus cuniculus (Rabbit)153177.37
    90% 
    RALMERalstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)61932.00
    89% 
    RALP1Ralstonia pickettii (strain 12D)53141.64
    90% 
    RALPJRalstonia pickettii (strain 12J)48861.54
    95% 
    RALSORalstonia solanacearum50151.66
    86% 
    RATNORattus norvegicus (Rat)2477011.64
    80% 
    RENSMRenibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)34200.93
    67% 
    RHIE6Rhizobium etli (strain CIAT 652)60981.86
    91% 
    RHIECRhizobium etli (strain CFN 42 / ATCC 51251)59641.87
    93% 
    RHIL3Rhizobium leguminosarum bv. viciae (strain 3841)72432.25
    92% 
    RHILORhizobium loti72472.17
    79% 
    RHILSRhizobium leguminosarum bv. trifolii (strain WSM1325)69882.11
    92% 
    RHILWRhizobium leguminosarum bv. trifolii (strain WSM2304)64031.98
    94% 
    RHIMERhizobium meliloti61191.89
    91% 
    RHISNRhizobium sp. (strain NGR234)62541.94
    87% 
    RHOBARhodopirellula baltica72562.29
     38%
    RHOCBRhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)36311.16
    0%
    RHOCSRhodospirillum centenum (strain ATCC 51521 / SW)40191.27
    77% 
    RHOE1Rhodococcus equi (strain 103S)45981.54
    0%
    RHOE4Rhodococcus erythropolis (strain PR4 / NBRC 100887)64242.09
    85% 
    RHOFDRhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)43981.47
    87% 
    RHOOBRhodococcus opacus (strain B4)81692.65
    86% 
    RHOP2Rhodopseudomonas palustris (strain HaA2)46801.55
    95% 
    RHOP5Rhodopseudomonas palustris (strain BisA53)48511.56
    91% 
    RHOPARhodopseudomonas palustris48291.59
    97% 
    RHOPBRhodopseudomonas palustris (strain BisB18)48621.56
    91% 
    RHOPSRhodopseudomonas palustris (strain BisB5)43881.41
    95% 
    RHOPTRhodopseudomonas palustris (strain TIE-1)52421.65
    94% 
    RHORTRhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)38361.29
    84% 
    RHOS1Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)41111.31
    96% 
    RHOS4Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)41221.30
    94% 
    RHOS5Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)41981.30
    89% 
    RHOSKRhodobacter sphaeroides (strain KD131 / KCTC 12085)45401.38
    90% 
    RHOSRRhodococcus sp. (strain RHA1)90652.87
    79% 
    RICAERickettsia africae (strain ESF-5)10410.31
    95% 
    RICAHRickettsia akari (strain Hartford)12550.31
    72% 
    RICB8Rickettsia bellii (strain OSU 85-389)14410.40
    87% 
    RICBRRickettsia bellii (strain RML369-C)13930.42
    93% 
    RICCKRickettsia canadensis (strain McKiel)10910.29
    75% 
    RICCNRickettsia conorii13740.34
    83% 
    RICFERickettsia felis14250.42
    80% 
    RICM5Rickettsia massiliae (strain Mtu5)9690.32
    95% 
    RICPRRickettsia prowazekii8320.28
    95% 
    RICPURickettsia peacockii (strain Rustic)9270.29
    98% 
    RICRORickettsia rickettsii (strain Iowa)13840.32
    85% 
    RICRSRickettsia rickettsii (strain Sheila Smith)13450.32
    87% 
    RICTYRickettsia typhi8370.28
    96% 
    ROSCSRoseiflexus castenholzii (strain DSM 13941 / HLO8)43241.56
    91% 
    ROSDORoseobacter denitrificans (strain ATCC 33942 / OCh 114)39391.24
    87% 
    ROSS1Roseiflexus sp. (strain RS-1)44941.63
    88% 
    ROTDCRothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA)22080.71
    0%
    ROTMDRothia mucilaginosa (strain DY-18)19910.76
    62% 
    RUBXDRubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)31210.98
    66% 
    RUTMCRuthia magnifica subsp. Calyptogena magnifica9760.31
    94% 
    SACD2Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)39931.45
    80% 
    SACENSaccharopolyspora erythraea (strain NRRL 23338)71462.31
    79% 
    SACVDSaccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)38281.24
    86% 
    SALA4Salmonella agona (strain SL483)45931.37
    92% 
    SALAISalinispora arenicola (strain CNS-205)48471.64
    88% 
    SALARSalmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)44991.33
    86% 
    SALCHSalmonella enterica subsp. enterica serovar Choleraesuis str. SC-B6745811.36
    95% 
    SALDCSalmonella dublin (strain CT_02021853)46071.35
    92% 
    SALEPSalmonella enteritidis PT4 (strain P125109)43031.35
    98% 
    SALG2Salmonella gallinarum (strain 287/91 / NCTC 13346)42581.35
    98% 
    SALHSSalmonella heidelberg (strain SL476)47571.40
    92% 
    SALNSSalmonella newport (strain SL254)47871.42
    92% 
    SALPASalmonella paratyphi-a40761.25
    98% 
    SALPBSalmonella paratyphi B (strain ATCC BAA-1250 / SPB7)55591.44
    80% 
    SALPCSalmonella paratyphi C (strain RKS4594)46001.35
    95% 
    SALPKSalmonella paratyphi A (strain AKU_12601)44901.38
    97% 
    SALRDSalinibacter ruber (strain DSM 13855)28111.01
    64% 
    SALSVSalmonella schwarzengrund (strain CVM19633)46031.36
    92% 
    SALTISalmonella typhi49111.48
    94% 
    SALTOSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)45221.52
    90% 
    SALTSSalmonella typhimurium (strain SL1344)44971.41
    0%
    SALTYSalmonella typhimurium45291.42
    98% 
    SANKSSanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74)37101.27
    86% 
    SARHASarcophilus harrisii (Tasmanian devil)193379.87
    88% 
    SCHMASchistosoma mansoni114045.25
     33%
    SCHPOSchizosaccharomyces pombe (Fission yeast)49582.34
    66% 
    SEBTESebaldella termitidis (strain ATCC 33386 / NCTC 11300)40561.26
    58% 
    SERP5Serratia proteamaculans (strain 568)49291.59
    92% 
    SHEAMShewanella amazonensis (strain ATCC BAA-1098 / SB2B)36381.26
    94% 
    SHEB2Shewanella baltica (strain OS223)43831.46
    95% 
    SHEB5Shewanella baltica (strain OS155 / ATCC BAA-1091)42181.39
    96% 
    SHEB8Shewanella baltica (strain OS185)43651.47
    97% 
    SHEB9Shewanella baltica (strain OS195)46161.53
    96% 
    SHEDOShewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)37261.27
    89% 
    SHEFNShewanella frigidimarina (strain NCIMB 400)39891.35
    95% 
    SHEHHShewanella halifaxensis (strain HAW-EB4)42751.45
    95% 
    SHELPShewanella loihica (strain BAA-1088 / PV-4)38541.31
    95% 
    SHEONShewanella oneidensis45841.37
    84% 
    SHEPAShewanella pealeana (strain ANG-SQ1 / ATCC 700345)41791.42
    96% 
    SHEPCShewanella putrefaciens (strain CN-32 / ATCC BAA-453)39481.32
    98% 
    SHEPWShewanella piezotolerans (strain WP3 / JCM 13877)48951.51
    83% 
    SHESAShewanella sp. (strain ANA-3)43411.49
    96% 
    SHESHShewanella sediminis (strain HAW-EB3)44931.52
    92% 
    SHESMShewanella sp. (strain MR-4)39181.34
    98% 
    SHESRShewanella sp. (strain MR-7)40031.36
    98% 
    SHESWShewanella sp. (strain W3-18-1)40071.32
    97% 
    SHEVDShewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)43331.35
    0%
    SHEWMShewanella woodyi (strain ATCC 51908 / MS32)48651.68
    90% 
    SHIB3Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)41211.15
    91% 
    SHIBSShigella boydii serotype 4 (strain Sb227)38261.15
    96% 
    SHIDSShigella dysenteriae serotype 1 (strain Sd197)37921.07
    88% 
    SHIF8Shigella flexneri serotype 5b (strain 8401)38491.18
    97% 
    SHIFLShigella flexneri42251.33
    93% 
    SHISSShigella sonnei (strain Ss046)39681.24
    97% 
    SILPOSilicibacter pomeroyi42311.37
    90% 
    SILSTSilicibacter sp. (strain TM1040)38451.22
    88% 
    SINMWSinorhizobium medicae (strain WSM419)61451.92
    92% 
    SLAHDSlackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1)27500.90
    51% 
    SODGMSodalis glossinidius (strain morsitans)24800.71
    82% 
    SOLUESolibacter usitatus (strain Ellin6076)77582.98
    57% 
    SORARSorex araneus (Common shrew)130995.86
    91% 
    SORBISorghum bicolor (Sorghum)3544712.81
    67% 
    SORC5Sorangium cellulosum (strain So ce56)93363.75
     46%
    SPETRSpermophilus tridecemlineatus (Squirrel)147986.49
    91% 
    SPHALSphingopyxis alaskensis31811.01
    86% 
    SPHTDSphaerobacter thermophilus (strain DSM 20745 / S 6022)34711.14
    76% 
    SPHWWSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)53111.78
    79% 
    SPILDSpirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)68662.43
    70% 
    SPITDSpirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1)21980.77
    0%
    STAA0Staphylococcus aureus (strain TW20 / 0582)28190.84
    0%
    STAA1Staphylococcus aureus (strain Mu3 / ATCC 700698)26770.80
    98% 
    STAA2Staphylococcus aureus (strain JH1)27550.81
    97% 
    STAA3Staphylococcus aureus (strain USA300)25990.79
    98% 
    STAA8Staphylococcus aureus (strain NCTC 8325)28870.80
    91% 
    STAA9Staphylococcus aureus (strain JH9)27020.81
    98% 
    STAABStaphylococcus aureus (strain bovine RF122)25760.76
    95% 
    STAACStaphylococcus aureus (strain COL)26740.77
    93% 
    STAADStaphylococcus aureus (strain ED98)26820.79
    93% 
    STAAEStaphylococcus aureus (strain Newman)25700.79
    97% 
    STAAFStaphylococcus aureus subsp. aureus (strain ED133)26200.76
    0%
    STAAHStaphylococcus aureus (strain TCH60)26900.79
    0%
    STAAMStaphylococcus aureus (strain Mu50 / ATCC 700699)27150.80
    98% 
    STAANStaphylococcus aureus (strain N315)25910.78
    98% 
    STAARStaphylococcus aureus (strain MRSA252)27170.80
    95% 
    STAASStaphylococcus aureus (strain MSSA476)26420.79
    96% 
    STAATStaphylococcus aureus (strain USA300 / TCH1516)26820.77
    93% 
    STAAWStaphylococcus aureus (strain MW2)26570.79
    96% 
    STACTStaphylococcus carnosus (strain TM300)24600.73
    89% 
    STAEQStaphylococcus epidermidis (strain ATCC 35984 / RP62A)24900.72
    87% 
    STAESStaphylococcus epidermidis (strain ATCC 12228)24390.70
    88% 
    STAHDStaphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8)15990.46
    91% 
    STAHJStaphylococcus haemolyticus (strain JCSC1435)26040.75
    87% 
    STALHStaphylococcus lugdunensis (strain HKU09-01)24560.74
    0%
    STAMFStaphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)15700.45
    93% 
    STANLStackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)63792.07
    74% 
    STAS1Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)25070.71
    88% 
    STRA1Streptococcus agalactiae serotype Ia19780.61
    96% 
    STRA3Streptococcus agalactiae serotype III20300.62
    94% 
    STRA5Streptococcus agalactiae (serotype V)21020.62
    93% 
    STRAWPhytoplasma sp. (strain STRAWB1)76652.61
    86% 
    STRBBStreptomyces bingchenggensis (strain BCW-1)100173.43
    0%
    STRCOStreptomyces coelicolor80862.64
    85% 
    STRDGStreptococcus dysgalactiae subsp. equisimilis (strain GGS_124)20860.61
    92% 
    STRE4Streptococcus equi subsp. equi (strain 4047)20430.62
    93% 
    STREMStreptococcus equi subsp. zooepidemicus (strain MGCS10565)18610.55
    89% 
    STRG3Streptococcus gallolyticus (strain UCN34)22490.68
    88% 
    STRGCStreptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)20500.64
    89% 
    STRGGStreptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)70102.47
    86% 
    STRM5Stenotrophomonas maltophilia (strain R551-3)40261.36
    94% 
    STRM6Streptococcus mitis (strain B6)19800.61
    0%
    STRM9Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901)14230.48
    68% 
    STRMKStenotrophomonas maltophilia (strain K279a)44001.44
    90% 
    STRMNStreptococcus mutans serotype c (strain NN2025)18930.57
    94% 
    STRMUStreptococcus mutans19520.58
    92% 
    STRP0Streptococcus pneumoniae serotype A19 (strain TCH8431)22570.60
    0%
    STRP1Streptococcus pyogenes serotype M116920.51
    98% 
    STRP2Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)19150.57
    97% 
    STRP3Streptococcus pyogenes serotype M318580.54
    96% 
    STRP4Streptococcus pneumoniae serotype 19F (strain G54)20990.59
    92% 
    STRP6Streptococcus pyogenes (serotype M6)18740.55
    95% 
    STRP7Streptococcus pneumoniae (strain 70585)21740.61
    93% 
    STRP8Streptococcus pyogenes (serotype M18)18330.53
    96% 
    STRPBStreptococcus pyogenes serotype M12 (strain MGAS2096)18840.54
    90% 
    STRPCStreptococcus pyogenes serotype M12 (strain MGAS9429)18660.53
    94% 
    STRPDStreptococcus pyogenes serotype M2 (strain MGAS10270)19620.56
    94% 
    STRPFStreptococcus pyogenes serotype M4 (strain MGAS10750)19630.56
    93% 
    STRPGStreptococcus pyogenes serotype M5 (strain Manfredo)18090.53
    97% 
    STRPIStreptococcus pneumoniae (strain Hungary19A-6)21510.62
    93% 
    STRPJStreptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1)21250.64
    96% 
    STRPMStreptococcus pyogenes serotype M2818860.55
    96% 
    STRPNStreptococcus pneumoniae21070.60
    90% 
    STRPSStreptococcus pneumoniae (strain CGSP14)21890.63
    93% 
    STRPUStrongylocentrotus purpuratus (Purple sea urchin)2688213.31
     44%
    STRPZStreptococcus pyogenes serotype M49 (strain NZ131)17020.51
    96% 
    STRR6Streptococcus pneumoniae (strain ATCC BAA-255 / R6)20300.59
    96% 
    STRRDStreptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100)89262.94
    78% 
    STRS2Streptococcus suis (strain 98HAH33)21780.61
    86% 
    STRS4Streptococcus suis (strain BM407)20260.63
    97% 
    STRS7Streptococcus equi subsp. zooepidemicus (strain H70)19400.60
    94% 
    STRSEStreptococcus suis (strain P1/7)18950.59
    98% 
    STRSVStreptococcus sanguinis (strain SK36)22670.70
    87% 
    STRSWStreptomyces scabies (strain 87.22)87582.92
    82% 
    STRSXStreptococcus suis (strain SC84)19700.61
    98% 
    STRSYStreptococcus suis (strain 05ZYH33)21780.61
    86% 
    STRT1Streptococcus thermophilus (strain CNRZ 1066)18970.50
    93% 
    STRT2Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)18660.50
    93% 
    STRTDStreptococcus thermophilus (strain ATCC BAA-491 / LMD-9)17040.47
    88% 
    STRU0Streptococcus uberis (strain ATCC BAA-854 / 0140J)18220.55
    92% 
    STRZIStreptococcus pneumoniae serotype 1 (strain INV104)19200.59
    0%
    STRZJStreptococcus pneumoniae (strain JJA)21160.59
    93% 
    STRZPStreptococcus pneumoniae (strain P1031)20660.58
    93% 
    STRZTStreptococcus pneumoniae (strain Taiwan19F-14)20340.58
    93% 
    SULAASulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825)17070.51
    92% 
    SULACSulfolobus acidocaldarius22150.63
    90% 
    SULAOSulfurimonas autotrophica (strain ATCC BAA-671 / DSM 16294 / JCM 11897 / OK10)21550.67
    0%
    SULD5Sulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175)22430.70
    86% 
    SULDNSulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)20820.67
    85% 
    SULIASulfolobus islandicus (strain M.16.27)26500.76
    97% 
    SULIDSulfolobus islandicus (strain L.D.8.5 / Lassen #2)29080.77
    91% 
    SULIKSulfolobus islandicus (strain M.16.4 / Kamchatka #3)27290.75
    95% 
    SULILSulfolobus islandicus (strain L.S.2.15 / Lassen #1)27240.76
    96% 
    SULIMSulfolobus islandicus (strain M.14.25 / Kamchatka #1)25960.74
    98% 
    SULINSulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2)28500.77
    93% 
    SULIYSulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1)28770.77
    93% 
    SULMDSulcia muelleri (strain DMIN)2260.08
    0%
    SULMSSulcia muelleri (strain SMDSEM)2420.08
    92% 
    SULMWSulcia muelleri (strain GWSS)2270.08
    90% 
    SULNBSulfurovum sp. (strain NBC37-1)24600.77
    77% 
    SULS9Sulfolobus solfataricus (strain 98/2)26170.71
    95% 
    SULSOSulfolobus solfataricus29280.83
    90% 
    SULSYSulfurihydrogenibium sp. (strain YO3AOP1)17120.52
    92% 
    SULTOSulfolobus tokodaii28120.76
    82% 
    SYMTHSymbiobacterium thermophilum33121.02
    66% 
    SYNASSyntrophus aciditrophicus (strain SB)31380.93
    67% 
    SYNFMSyntrophobacter fumaroxidans (strain DSM 10017 / MPOB)40101.35
    73% 
    SYNJASynechococcus sp. (strain JA-3-3Ab)27120.82
    87% 
    SYNJBSynechococcus sp. (strain JA-2-3B'a(2-13))28210.86
    86% 
    SYNLTSyntrophothermus lipocalidus (strain DSM 12680 / TGB-C1)23110.69
    0%
    SYNP2Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)31790.99
    83% 
    SYNP6Synechococcus sp. (strain PCC 6301)25210.78
    84% 
    SYNPWSynechococcus sp. (strain WH7803)25300.73
    89% 
    SYNPXSynechococcus sp. (strain WH8102)25230.73
    86% 
    SYNR3Synechococcus sp. (strain RCC307)25320.70
    80% 
    SYNS3Synechococcus sp. (strain CC9311)28810.75
    77% 
    SYNS9Synechococcus sp. (strain CC9902)23010.66
    93% 
    SYNSCSynechococcus sp. (strain CC9605)26310.72
    84% 
    SYNWWSyntrophomonas wolfei subsp. wolfei (strain Goettingen)24710.79
    76% 
    SYNY3Synechocystis sp. (strain PCC 6803)34991.12
    82% 
    TAEGUTaeniopygia guttata (Zebra finch)167807.75
    87% 
    TAKRUTakifugu rubripes (Fugu)2292912.88
    77% 
    TARSYTarsius syrichta (Tarsier)135006.41
    93% 
    TAYEMTaylorella equigenitalis (strain MCE9)15560.52
    0%
    TERTTTeredinibacter turnerae (strain ATCC 39867 / T7901)42491.49
    75% 
    TETNGTetraodon nigroviridis (Green puffer)2000710.11
    88% 
    THASPThauera sp. (strain MZ1T)39271.34
    90% 
    THEABThermosipho africanus (strain TCF52B)19180.60
    91% 
    THEACThermoplasma acidophilum14810.45
    88% 
    THEAMThermosphaera aggregans (strain DSM 11486 / M11TL)13870.40
    87% 
    THEASThermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883)17370.57
    81% 
    THECDThermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081)48881.57
    81% 
    THEEBThermosynechococcus elongatus (strain BP-1)24470.77
    86% 
    THEFYThermobifida fusca (strain YX)31081.03
    83% 
    THEGJThermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)21570.64
    87% 
    THELTThermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)20400.67
    88% 
    THEM3Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3)21580.66
    0%
    THEM4Thermosipho melanesiensis (strain BI429 / DSM 12029)18770.58
    89% 
    THEMAThermotoga maritima18520.58
    95% 
    THENRThermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10)17650.56
    99% 
    THENVThermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)19650.53
    94% 
    THEONThermococcus onnurineus (strain NA1)19760.56
    90% 
    THEP1Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)17830.57
    98% 
    THEP3Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)21920.66
    95% 
    THEPDThermofilum pendens (strain Hrk 5)18760.54
    68% 
    THEPXThermoanaerobacter sp. (strain X514)23220.70
    94% 
    THERPThermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)28580.87
    73% 
    THESMThermococcus sibiricus (strain MM 739 / DSM 12597)20360.55
    85% 
    THESQThermotoga sp. (strain RQ2)18180.59
    99% 
    THET1Thermobaculum terrenum (strain ATCC BAA-798 / YNP1)28270.94
    72% 
    THET2Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)22010.67
    93% 
    THET8Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)22270.66
    91% 
    THETNThermoanaerobacter tengcongensis25470.76
    85% 
    THEVOThermoplasma volcanium15220.45
    86% 
    THEYDThermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)19820.61
    75% 
    THICRThiomicrospira crunogena (strain XCL-2)21830.72
    80% 
    THIDAThiobacillus denitrificans (strain ATCC 25259)28260.89
    85% 
    THISHThioalkalivibrio sp. (strain HL-EbGR7)32721.00
    80% 
    TREDETreponema denticola27530.86
    59% 
    TREPATreponema pallidum10270.35
    96% 
    TREPSTreponema pallidum subsp. pallidum (strain SS14)10280.35
    96% 
    TRIADTrichoplax adhaerens114665.21
    62% 
    TRIEITrichodesmium erythraeum (strain IMS101)43271.52
    66% 
    TROW8Tropheryma whipplei (strain TW08/27) (Whipple's bacillus)7800.26
    95% 
    TROWTTropheryma whipplei (strain Twist)8050.26
    92% 
    TRYBBTrypanosoma brucei67853.38
    53% 
    TUPGBTupaia belangeri (Tree shrew)153736.81
    91% 
    TURTRTursiops truncatus (Dolphin)164458.98
    98% 
    UNCMAUncultured methanogenic archaeon RC-I30690.89
    77% 
    UNCTGUncultured termite group 1 bacterium phylotype Rs-D177670.25
    84% 
    UREP2Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736)6090.23
    99% 
    UREPAUreaplasma parvum6110.23
    97% 
    UREU1Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western)6460.26
    88% 
    USTMAUstilago maydis65103.99
     50%
    VARPEVariovorax paradoxus (strain EPS)59361.99
    ---
    VEREIVerminephrobacter eiseniae (strain EF01-2)49091.65
    82%